PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT2G18490.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | C2H2 | ||||||||
Protein Properties | Length: 251aa MW: 29424 Da PI: 9.3191 | ||||||||
Description | C2H2-like zinc finger protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.8 | 1.9e-05 | 169 | 191 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+Cp+C+ F ++ + H+++H AT2G18490.1 169 YTCPKCNSIFDTSQKFAAHMSSH 191 9********************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 9.369 | 169 | 196 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 171 | 191 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0090057 | Biological Process | root radial pattern formation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
MRRNIDYVSS TDYLPIKDNP HLTRVSFTQT ITNRYSSIVP TNSLDAVQYD IELVKRAMDS 60 KPNIWNPVFY PPNFLGKQCE ILNPEPLNVI FPHQNSGDRQ YLNMFSLSSK HNHDQNVFHE 120 GRSSTKIPKP TMSIEKTTEY IDCEENEKSD DAQYDGRIHS LPYKKYGPYT CPKCNSIFDT 180 SQKFAAHMSS HYKSETNKER AQRFRARNKR KYRKLNLEVY GESQKIKQED GVHNDGRSDD 240 KPIQHHKILF R |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 18398756 | 0.0 | ||||
Genevisible | 265921_at | 0.0 | ||||
Expression Atlas | AT2G18490 | - | ||||
AtGenExpress | AT2G18490 | - | ||||
ATTED-II | AT2G18490 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT2G18490.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT2G18490 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC006135 | 0.0 | AC006135.3 Arabidopsis thaliana chromosome 2 clone F24H14 map CIC06E08, complete sequence. | |||
GenBank | CP002685 | 0.0 | CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001323986.1 | 0.0 | C2H2-like zinc finger protein | ||||
Refseq | NP_179439.1 | 0.0 | C2H2-like zinc finger protein | ||||
TrEMBL | Q1PF47 | 0.0 | Q1PF47_ARATH; C2H2-like zinc finger protein | ||||
TrEMBL | Q9ZU64 | 0.0 | Q9ZU64_ARATH; C2H2-like zinc finger protein | ||||
STRING | AT2G18490.1 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1924 | 19 | 58 |
Link Out ? help Back to Top | |
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Phytozome | AT2G18490.1 |
Entrez Gene | 816364 |
iHOP | AT2G18490 |
wikigenes | AT2G18490 |
Publications ? help Back to Top | |||
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