PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10027158m | ||||||||
Common Name | CARUB_v10027158mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | bHLH | ||||||||
Protein Properties | Length: 201aa MW: 22602.9 Da PI: 9.6533 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 25.7 | 2e-08 | 29 | 80 | 2 | 55 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 + h +Er+RR+++ f+ Lr++lP ++K ++ + Av +Ik+ q Carubv10027158m 29 KLLHRNIERQRRQEMAILFASLRSHLPLkY---IKGKRAMSDHVNGAVAFIKDTQ 80 567999**********************77...9999999***********9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.25E-12 | 24 | 103 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.91E-8 | 25 | 84 | No hit | No description |
PROSITE profile | PS50888 | 11.109 | 27 | 79 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 6.2E-6 | 29 | 80 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.2E-7 | 29 | 99 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 201 aa Download sequence Send to blast |
MDPCNNPKKT RHQISHIPHV GDETKKEKKL LHRNIERQRR QEMAILFASL RSHLPLKYIK 60 GKRAMSDHVN GAVAFIKDTQ TRIQELSARR DELKREISDH TSQTRSGSGS SRSEPASVMV 120 QPCVSGFEVV VSSSASGLPL SRVLEVLHEQ GLEVISSLTA RVNERLMYTI QVEVNSFGCC 180 DLAWLQQKLI EELVLPTTRH * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10027158m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB493789 | 0.0 | AB493789.1 Arabidopsis thaliana At5g51790 mRNA for hypothetical protein, partial cds, clone: RAAt5g51790. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006281128.1 | 1e-147 | transcription factor bHLH120 isoform X1 | ||||
Swissprot | Q9FLI0 | 1e-115 | BH120_ARATH; Transcription factor bHLH120 | ||||
TrEMBL | R0EYP6 | 1e-146 | R0EYP6_9BRAS; Uncharacterized protein | ||||
STRING | XP_006281128.1 | 1e-146 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2968 | 27 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51790.1 | 1e-115 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Carubv10027158m |
Entrez Gene | 17875905 |
Publications ? help Back to Top | |||
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