PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10026947m
Common NameCARUB_v10026947mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family B3
Protein Properties Length: 274aa    MW: 31458.4 Da    PI: 9.2572
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10026947mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B357.72.1e-18132221198
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                      f+k +++s+v +  +l lp  f+ ++ ++  e+++++lede+g+++e  +   +k+ +  l++GWk+F+ +++L++gD ++F+l++ ++f  ++
  Carubv10026947m 132 FVKSMLRSHVYSCFWLGLPSGFCVDNFSE--ETIEVVLEDEEGEEYEAVY--IGKRTG--LSGGWKRFALDHKLDDGDALLFELVEPKRF--KI 217
                      89************************866..6789***************..555544..***********************9987777..88 PP

                      EEE- CS
               B3  95 kvfr 98 
                       vfr
  Carubv10026947m 218 YVFR 221
                      8887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.89E-23125223IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.3E-21125222IPR015300DNA-binding pseudobarrel domain
CDDcd100171.94E-18130221No hitNo description
PfamPF023625.0E-17132222IPR003340B3 DNA binding domain
SMARTSM010191.1E-25132223IPR003340B3 DNA binding domain
PROSITE profilePS5086313.098132223IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MAYEEARKLR LQENLKRFQD LGISQISKAL LTQIPKKTLQ RNPRPIDKAL FATAEPRRSS  60
RVRTPISSYR DDVDVDTGPT LNLRRSRRNS SWDSYIARPK HECKFASYEE KVGALKAAEE  120
FQSRLESPHP SFVKSMLRSH VYSCFWLGLP SGFCVDNFSE ETIEVVLEDE EGEEYEAVYI  180
GKRTGLSGGW KRFALDHKLD DGDALLFELV EPKRFKIYVF RGNESANLTS KEKRVRARQS  240
EEEDKDVEES GDEGDSSRAT KRLSSRLLRK RKA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10026947m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0192282e-71AB019228.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MCK7.
GenBankCP0026882e-71CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006280945.10.0putative B3 domain-containing protein At5g58280 isoform X4
SwissprotQ9FHB21e-130Y5828_ARATH; Putative B3 domain-containing protein At5g58280
TrEMBLR0GRK80.0R0GRK8_9BRAS; Uncharacterized protein
STRINGXP_006280945.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM161411214
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58280.11e-110B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]