PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10026925m
Common NameCARUB_v10026925mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family ERF
Protein Properties Length: 282aa    MW: 31583.9 Da    PI: 9.238
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10026925mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.32.2e-19114163255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       y+GVr++  +g+WvAeIr p++   r+r +lg+f tae+Aa a+++a+ k++g
  Carubv10026925m 114 LYRGVRQRQ-WGKWVAEIRLPKN---RTRLWLGTFETAEQAALAYDQAAHKIRG 163
                      59****999.**********965...5************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000189.70E-33113173No hitNo description
SMARTSM003802.7E-36114177IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.5E-32114171IPR001471AP2/ERF domain
SuperFamilySSF541712.35E-22114172IPR016177DNA-binding domain
PROSITE profilePS5103223.103114171IPR001471AP2/ERF domain
PRINTSPR003674.6E-11115126IPR001471AP2/ERF domain
PfamPF008473.0E-13115163IPR001471AP2/ERF domain
PRINTSPR003674.6E-11137153IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MAIALNMNGY MDEFTKALEP FMKVSSPSSP SSSSTPKTFT PPFDFIPNNN QALLVSNQPG  60
PIGLNQLTSA QILQIQTELH LRHNHQSRRR SGHLLTAKPT PMKKTDVVTK PVKLYRGVRQ  120
RQWGKWVAEI RLPKNRTRLW LGTFETAEQA ALAYDQAAHK IRGDNARLNF PIVALRGDYK  180
QTLSPSISAK IETVCKSSDL TLPQLQKQAK TEDVFSGFHY TGYKPEQEPD FVSGCSGTSP  240
ESDVTLLDFS SEYMKEGESF LMGLNKYPSL EIDWDALEKL F*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-22113172161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A5e-22113178470ATERF1
3gcc_A5e-22113178470ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00585DAPTransfer from AT5G65130Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10026925m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006280928.10.0ethylene-responsive transcription factor ERF057
SwissprotQ9FJQ21e-146ERF57_ARATH; Ethylene-responsive transcription factor ERF057
TrEMBLR0EY310.0R0EY31_9BRAS; Uncharacterized protein
STRINGXP_006280928.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM134991728
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65130.11e-134ERF family protein
Publications ? help Back to Top
  1. Ikeuchi M, et al.
    PRC2 represses dedifferentiation of mature somatic cells in Arabidopsis.
    Nat Plants, 2015. 1: p. 15089
    [PMID:27250255]