PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10026862m
Common NameCARUB_v10026781mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family TCP
Protein Properties Length: 302aa    MW: 32422.5 Da    PI: 7.5062
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10026862mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP118.77.2e-3759134276
              TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eae 76 
                      ++ k++++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++ti WLl+ a+pai+e+tgt++++a ++  ++
  Carubv10026862m  59 PATKRPTKDRHTKVEGRGRRIRMPAGCAARIFQLTRELGHKSDGETIRWLLERAEPAIIEATGTGTIPAIAVsVNG 134
                      5789************************************************************999995553222 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036349.8E-3065141IPR005333Transcription factor, TCP
PROSITE profilePS5136927.69865119IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0031347Biological Processregulation of defense response
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MESNQEGKAI REIDGNVDQV TMTNLFDPDP KPNPGLLMKK EEVGFLQPQM MTTTSSLKPA  60
TKRPTKDRHT KVEGRGRRIR MPAGCAARIF QLTRELGHKS DGETIRWLLE RAEPAIIEAT  120
GTGTIPAIAV SVNGTLKIPT TSPNDGGGDG DGDLTKKRRK RNCTSDFVDV NEHDSCHSSV  180
TSGLAPITPS NYGVNIMNVN TQGLVPFWPM GMGTAFVTNG PNQMGQMWAI PTVATAPFLN  240
VGTRPVSSYV STAEPQMETS GDGGATQPLR DFSLEIYDKK ELQFLGGSGN SSPSSSCHNK  300
T*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1155159KKRRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00007PBMTransfer from 495258Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10026862m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0256230.0AB025623.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MJM18.
GenBankAK1185790.0AK118579.1 Arabidopsis thaliana At5g51910 mRNA for unknown protein, complete cds, clone: RAFL19-81-E01.
GenBankBT0087790.0BT008779.1 Arabidopsis thaliana At5g51910 mRNA, complete cds.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006280812.20.0transcription factor TCP19
RefseqXP_006280813.10.0transcription factor TCP19
SwissprotQ9LT891e-154TCP19_ARATH; Transcription factor TCP19
TrEMBLR0EXS10.0R0EXS1_9BRAS; Uncharacterized protein
TrEMBLR0GMZ10.0R0GMZ1_9BRAS; Uncharacterized protein (Fragment)
STRINGXP_006280812.10.0(Capsella rubella)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51910.21e-156TCP family protein