PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Carubv10026752m

Common Name

CARUB_v10026752mg

Organism

Capsella rubella

Taxonomic ID

81985

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

NAC

Protein Properties

Length: 334aa MW: 38248.4 Da PI: 8.6609

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Carubv10026752m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	181.9	1.6e-56	16	142	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 lppGfrFhPtdeel+++yL+kkv + ++++ ++i evd++k+ePw+Lp ++k +ekewyfF+ rd+ky+tg r+nrat++gyWkatgkdke+++ Carubv10026752m 16 LPPGFRFHPTDEELITHYLHKKVLDITFSA-KAIGEVDLNKSEPWELPWMAKMGEKEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIYR 108 79************************99.88***********8888899*********************************** PP NAM 95 kkgelvglkktLvfykgrapkgektdWvmheyrle 129 +++lvg+kktLvfy+grapkg+kt+Wvmheyrle Carubv10026752m 109 -GKSLVGMKKTLVFYRGRAPKGQKTNWVMHEYRLE 142 .999***************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.02E-64	12	166	IPR003441	NAC domain
PROSITE profile	PS51005	59.963	16	166	IPR003441	NAC domain
Pfam	PF02365	8.7E-30	17	141	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 334 aa Download sequence Send to blast
METFCGFQKE EEQMDLPPGF RFHPTDEELI THYLHKKVLD ITFSAKAIGE VDLNKSEPWE 60 LPWMAKMGEK EWYFFCVRDR KYPTGLRTNR ATEAGYWKAT GKDKEIYRGK SLVGMKKTLV 120 FYRGRAPKGQ KTNWVMHEYR LEGKFSPHNL PKTAKNEWVI CRVFQKSAGG KKIPISSLIR 180 IGSLGTDFNP SLLPSLTDSL PYNDKTKTEP VYVPCFSNQT DHNQGTTLNC FSSPALNSIQ 240 ADIFHRLPLY QTQPLQVPTN LQSPILAQEH SVLHAMIENN RRRQSHKTMS VSQETGVSTD 300 ISSDFEFGKR RFEPQEDPSS STGPVDLEPF WNY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	3e-55	13	172	14	171	NO APICAL MERISTEM PROTEIN
1ut4_B	3e-55	13	172	14	171	NO APICAL MERISTEM PROTEIN
1ut7_A	3e-55	13	172	14	171	NO APICAL MERISTEM PROTEIN
1ut7_B	3e-55	13	172	14	171	NO APICAL MERISTEM PROTEIN
3swm_A	3e-55	13	172	17	174	NAC domain-containing protein 19
3swm_B	3e-55	13	172	17	174	NAC domain-containing protein 19
3swm_C	3e-55	13	172	17	174	NAC domain-containing protein 19
3swm_D	3e-55	13	172	17	174	NAC domain-containing protein 19
3swp_A	3e-55	13	172	17	174	NAC domain-containing protein 19
3swp_B	3e-55	13	172	17	174	NAC domain-containing protein 19
3swp_C	3e-55	13	172	17	174	NAC domain-containing protein 19
3swp_D	3e-55	13	172	17	174	NAC domain-containing protein 19
4dul_A	3e-55	13	172	14	171	NAC domain-containing protein 19
4dul_B	3e-55	13	172	14	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Carubv10026752m

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY054644	0.0	AY054644.1 Arabidopsis thaliana NAM (no apical meristem)-like protein (MFB13.22) mRNA, complete cds.
GenBank	AY081496	0.0	AY081496.1 Arabidopsis thaliana NAM (no apical meristem)-like protein (MFB13.22) mRNA, complete cds.
GenBank	AY085102	0.0	AY085102.1 Arabidopsis thaliana clone 12970 mRNA, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006280783.1	0.0	NAC domain-containing protein 100
Swissprot	Q9FLJ2	0.0	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	R0EXP7	0.0	R0EXP7_9BRAS; Uncharacterized protein
STRING	XP_006280783.1	0.0	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM400	28	174

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61430.1	0.0	NAC domain containing protein 100

Link Out ? help Back to Top
Phytozome	Carubv10026752m
Entrez Gene	17875256

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]