PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10026734m
Common NameCARUB_v10026734mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family HSF
Protein Properties Length: 340aa    MW: 38380.8 Da    PI: 7.591
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10026734mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind119.22.3e-37571482102
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                      Fl+k+y+++ed++++++isw+e+g+sf+v+++++fak++Lpk+Fkh+nf+SFvRQLn+YgFkkv  ++         weF++++Fk+g+k+ll+
  Carubv10026734m  57 FLTKTYNLVEDSSINDVISWNEDGSSFIVWNPTDFAKDLLPKHFKHNNFSSFVRQLNTYGFKKVVPDR---------WEFSNDYFKRGEKHLLR 141
                      9*****************************************************************99.........***************** PP

                      XXXXXXX CS
     HSF_DNA-bind  96 kikrkks 102
                      +i+r+k 
  Carubv10026734m 142 EIQRRKI 148
                      ****985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004155.5E-5753146IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.3E-3854146IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467853.81E-3554146IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.5E-3257146IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.5E-195780IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.5E-1995107IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434096120IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.5E-19108120IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
SSFFRYFQGT LFYFVFSLNN LITSLLSIVS IMNSPPVDAM MTGGVESSSQ RSIPTPFLTK  60
TYNLVEDSSI NDVISWNEDG SSFIVWNPTD FAKDLLPKHF KHNNFSSFVR QLNTYGFKKV  120
VPDRWEFSND YFKRGEKHLL REIQRRKITT SSSSHQQAVV VPLSEQRIQT TVVSPSNSGE  180
DNNNNNNNQV MSSSPTSWYC QTTAGDGGLS VELLEENEKL RNQNIQLNRE LTQMKSVCDN  240
IFSLMSNYVG SHPDRSYSLG GTSSQPLEFL PAKRFSDAEV EEEEASPRLF GVPIGLKRTR  300
SEGAKVKTTT AAVGEKKSGE ETPWLRHYNY NRTNQRVCN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d8k_B1e-23571515109Heat shock factor protein 2
5d8l_B1e-23571515109Heat shock factor protein 2
5d8l_D1e-23571515109Heat shock factor protein 2
5d8l_F1e-23571515109Heat shock factor protein 2
5d8l_H1e-23571515109Heat shock factor protein 2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00575DAPTransfer from AT5G62020Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10026734m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006280765.20.0heat stress transcription factor B-2a
SwissprotQ9SCW41e-177HFB2A_ARATH; Heat stress transcription factor B-2a
TrEMBLR0GR580.0R0GR58_9BRAS; Uncharacterized protein (Fragment)
STRINGXP_006280765.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM96528111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.11e-164heat shock transcription factor B2A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]