PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10026732m
Common NameCARUB_v10026720mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family BBR-BPC
Protein Properties Length: 340aa    MW: 37893.8 Da    PI: 9.6391
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10026732mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind407.61.6e-12413391301
        GAGA_bind   1 mdddgsre..rnkgyyepa.aslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvensl 91 
                      mdd g+re  r+k+   ++ +s+k     q+ms+iaerda+i+ernla+sekkaa+aerdmaflqrd+a+aern+a++erd++l+al+++ens+
  Carubv10026732m   1 MDDGGHREngRHKAAQGQHqPSMK-----QVMSIIAERDAAIQERNLAISEKKAAIAERDMAFLQRDTAIAERNNAIMERDSALTALQYRENSM 89 
                      9*****988999995555548898.....****************************************************************9 PP

        GAGA_bind  92 a.......salpvgvqvlsgtksidslqqlse.......pqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkks 171
                      +       sa+p+g+q+++g+k++++ +++++       pql+++a+e re+e ++ lp++ +a ++ e++k+k+++r k+pk++++++++k++
  Carubv10026732m  90 VtaasanmSACPPGCQISRGVKNMHHPHMHHHhhqqhhiPQLTENAYEPREMEPNDGLPTSPTAGSVLESAKPKRGKRVKDPKTTTQTAANKRG 183
                      999999999*****************999666689999******************************************************** PP

        GAGA_bind 172 ekskkkvkkesader........................skaekksidl.vlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiS 240
                      +k+++kvkkes+d+                         sk+++ks+++ +ln+v +De+t+P+PvCsCtG+lrqCYkWGnGGWqS+CCttt+S
  Carubv10026732m 184 TKNQRKVKKESEDDLtkimflktthdyteedsskhiligSKSDWKSQEMvGLNQVVYDETTMPPPVCSCTGVLRQCYKWGNGGWQSSCCTTTLS 277
                      ***********984358********************************88******************************************* PP

        GAGA_bind 241 vyPLPvstkrrgaRiagrKmSqgafkklLekLaaeG.ydlsnpvDLkdhWAkHGtnkfvtir 301
                      +yPLP+ +++r+aR++grKmS++af+klL++LaaeG +dlsnpvDLkdhWAkHGtn+++ti+
  Carubv10026732m 278 MYPLPALPNKRHARVGGRKMSGSAFNKLLSRLAAEGhHDLSNPVDLKDHWAKHGTNRYITIK 339
                      ************************************88***********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012262.3E-1751339IPR010409GAGA-binding transcriptional activator
PfamPF062176.0E-1011339IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0005730Cellular Componentnucleolus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MDDGGHRENG RHKAAQGQHQ PSMKQVMSII AERDAAIQER NLAISEKKAA IAERDMAFLQ  60
RDTAIAERNN AIMERDSALT ALQYRENSMV TAASANMSAC PPGCQISRGV KNMHHPHMHH  120
HHHQQHHIPQ LTENAYEPRE MEPNDGLPTS PTAGSVLESA KPKRGKRVKD PKTTTQTAAN  180
KRGTKNQRKV KKESEDDLTK IMFLKTTHDY TEEDSSKHIL IGSKSDWKSQ EMVGLNQVVY  240
DETTMPPPVC SCTGVLRQCY KWGNGGWQSS CCTTTLSMYP LPALPNKRHA RVGGRKMSGS  300
AFNKLLSRLA AEGHHDLSNP VDLKDHWAKH GTNRYITIK*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00540DAPTransfer from AT5G42520Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10026732m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0885640.0AY088564.1 Arabidopsis thaliana clone 7878 mRNA, complete sequence.
GenBankAY3805720.0AY380572.1 Arabidopsis thaliana basic pentacysteine 6 (BPC6) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006280750.10.0protein BASIC PENTACYSTEINE6 isoform X2
SwissprotQ8L9990.0BPC6_ARATH; Protein BASIC PENTACYSTEINE6
TrEMBLR0GR440.0R0GR44_9BRAS; Uncharacterized protein
STRINGXP_006280751.10.0(Capsella rubella)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42520.20.0basic pentacysteine 6