PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10026682m | ||||||||
Common Name | CARUB_v10026682mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | ERF | ||||||||
Protein Properties | Length: 355aa MW: 40240.3 Da PI: 4.3064 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.6 | 8.3e-20 | 125 | 175 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++++GVr+++ +g+W+AeIrdp + r+r++lg+f taeeAa +++a+ +l+g Carubv10026682m 125 KKFRGVRQRP-WGKWAAEIRDPEQ---RRRIWLGTFETAEEAAVVYDNAAIRLRG 175 59********.**********743...5*************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 4.72E-34 | 125 | 182 | No hit | No description |
SMART | SM00380 | 1.7E-39 | 126 | 189 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 4.4E-12 | 126 | 175 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.18E-21 | 126 | 184 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 3.2E-30 | 126 | 183 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.775 | 126 | 183 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.6E-10 | 127 | 138 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.6E-10 | 149 | 165 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0042991 | Biological Process | transcription factor import into nucleus | ||||
GO:0048825 | Biological Process | cotyledon development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 355 aa Download sequence Send to blast |
MIMDEYINFR PLKYTEHKTS VTKYTKKSSS PAKKLSDQSP PDSFRKVRIS FTDPDATDSS 60 SDEDEEDFLF PRRRVKRFVN EITVEPACNN ASAAVSMKER KRLSDESLQS PAKRPLKVSV 120 SGQTKKFRGV RQRPWGKWAA EIRDPEQRRR IWLGTFETAE EAAVVYDNAA IRLRGPDALT 180 NFSIPPQEEE EEEPEPVIDT KPEINITTTT TTTTTTSSSE STEDFQHLSS PTSVLNLQSE 240 EIQQIQQPFK SSKPEPEISE APWWHTGFST GTGETTDDSF PLNTLFLDSY FNESPPEMSI 300 FDQPMGHHQG FYENDDIFSD MILESESIIN NDDDDLMTSF SDFDDSLISD LLVA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 3e-22 | 125 | 184 | 1 | 61 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10026682m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006280717.1 | 0.0 | ethylene-responsive transcription factor CRF3 | ||||
Swissprot | Q9FK12 | 1e-154 | CRF3_ARATH; Ethylene-responsive transcription factor CRF3 | ||||
TrEMBL | R0GMR3 | 0.0 | R0GMR3_9BRAS; Uncharacterized protein | ||||
STRING | XP_006280717.1 | 0.0 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2229 | 25 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G53290.1 | 1e-135 | cytokinin response factor 3 |
Link Out ? help Back to Top | |
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Phytozome | Carubv10026682m |
Entrez Gene | 17875597 |
Publications ? help Back to Top | |||
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