PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10026611m
Common NameCARUB_v10026480mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family C2H2
Protein Properties Length: 373aa    MW: 41434.9 Da    PI: 9.7656
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10026611mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.26.3e-052648123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     + C++C+k F r  nL+ H r H
  Carubv10026611m 26 FFCEICSKGFQREQNLQLHKRGH 48
                     67******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.604.3E-52548IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.8E-72548No hitNo description
SMARTSM003550.0192648IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.7412648IPR007087Zinc finger, C2H2
PfamPF121711.5E-52648IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS0002802848IPR007087Zinc finger, C2H2
SMARTSM003551206898IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.6E-491124IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.8E-798123No hitNo description
SMARTSM00355180103123IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MNNDKTDPDA EVIALSPKSL MATNRFFCEI CSKGFQREQN LQLHKRGHNL PWKLKQRTNK  60
NQVKKKVYIC PEKSCVHHDP TRALGDLTGI KKHFSRKHGE KKWKCDKCSK KYAVVSDWKA  120
HTKICGSREF RCDCGTLFSR KDSFISHRSF CDVLAEESAK FFSVPSPLAA NSTISTVADT  180
NNPVLIQSLT CTADLNVNNN HSTLLGKKFI NSEPIPQRAN AFAFSPPPTP RGTSDNSVHN  240
LWKLQEEECS HQSLLNGYMN NNKNISHKGI SQNQENAIIK KGNIYSGSNS SDANIASLFS  300
YNQEAGNLAS LSATTLLQKV AEMGSSSRSD TGTLLGLMTS SIFNNRMPNS DCLKAKNKKE  360
EWTRDFLGVG KP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-3199164368Zinc finger protein JACKDAW
5b3h_F2e-3199164368Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10026611m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0264280.0BT026428.1 Arabidopsis thaliana At5g60470 mRNA, complete cds.
GenBankDQ0567310.0DQ056731.1 Arabidopsis thaliana zinc finger (C2H2 type) family protein (At5g60470) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006280537.10.0protein indeterminate-domain 13
SwissprotF4JYZ80.0IDD13_ARATH; Protein indeterminate-domain 13
TrEMBLR0EX590.0R0EX59_9BRAS; Uncharacterized protein
STRINGXP_006280537.10.0(Capsella rubella)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60470.10.0C2H2 family protein
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]