PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10026561m
Common NameCARUB_v10026561mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family B3
Protein Properties Length: 394aa    MW: 45260.8 Da    PI: 6.0326
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10026561mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3621e-1999189198
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                      f+k++  +++  s+rlv+p+ + + + ++   ++t +l+ ++g+ W+vk   +k+++  + +++GW++Fvk+ngL ++Df++F++dg+++f  +
  Carubv10026561m  99 FLKIF--NSHEHSQRLVIPRGYNKYYPNP--LPQTAVLKRPEGNFWTVKW--KKGQEDtISFQEGWEKFVKDNGLIDRDFLLFTYDGSRSF--W 184
                      66777..66666778*******9666644..889****************..55555559*************************998888..9 PP

                      EEEE- CS
               B3  94 vkvfr 98 
                      v+++r
  Carubv10026561m 185 VRIHR 189
                      99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.34E-2195189IPR015300DNA-binding pseudobarrel domain
CDDcd100173.95E-1897189No hitNo description
PROSITE profilePS5086313.74797191IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.9E-2097189IPR015300DNA-binding pseudobarrel domain
PfamPF023623.9E-1899189IPR003340B3 DNA binding domain
SMARTSM010194.2E-2099191IPR003340B3 DNA binding domain
SMARTSM010190.32301389IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MNVKDGNTEI IQKVKVFLEM EVLLVCLHLL LHGLIYQLFN VQIVQVKRIS YTNISGSYLC  60
RWTLTIHLGP NRLDGVIKRI QTQAKKMVLE NGFPPLPDFL KIFNSHEHSQ RLVIPRGYNK  120
YYPNPLPQTA VLKRPEGNFW TVKWKKGQED TISFQEGWEK FVKDNGLIDR DFLLFTYDGS  180
RSFWVRIHRD GLPLEPSTPI KIQEISDDEI DTAGGGPDRH MEEGDSHEDM IVSLSLGTSD  240
ELSDDDDDDD YDDDEDTAIC EFNKASGSCS KKGRVMKTRR DAVIAESVKV ETLLEDPQNP  300
FFISTSSCSR RVLVISMQVI KDFNLKFEPT IKLIDGFGEL KRKVGKWKDR VVVYKWDEMY  360
NRNKSMPGDI IICEILRDEG DVVHTVKVHF VKK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1yel_A1e-15991881199At1g16640
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10026561m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023633151.10.0B3 domain-containing protein At5g57720 isoform X2
SwissprotQ9FHH11e-149Y5772_ARATH; B3 domain-containing protein At5g57720
TrEMBLR0EWE20.0R0EWE2_9BRAS; Uncharacterized protein
STRINGXP_006280599.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM137971723
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57720.11e-143B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]