PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10026540m | ||||||||
Common Name | CARUB_v10026540mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | ERF | ||||||||
Protein Properties | Length: 399aa MW: 43401.5 Da PI: 8.8303 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.7 | 8.2e-20 | 184 | 233 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrd + + +r++lg+f+ ae Aa+a+++a+++++g Carubv10026540m 184 RYRGVRQRP-WGKWAAEIRDpF-----KaARVWLGTFDNAESAARAYDEAALRFRG 233 7********.**********66.....56*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 3.1E-13 | 184 | 233 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 8.4E-36 | 184 | 247 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 8.7E-32 | 184 | 242 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 25.106 | 184 | 241 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.49E-22 | 184 | 242 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 5.3E-11 | 185 | 196 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 7.15E-27 | 192 | 243 | No hit | No description |
PRINTS | PR00367 | 5.3E-11 | 207 | 223 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0006970 | Biological Process | response to osmotic stress | ||||
GO:0009749 | Biological Process | response to glucose | ||||
GO:0009788 | Biological Process | negative regulation of abscisic acid-activated signaling pathway | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 399 aa Download sequence Send to blast |
MCVLKVANQE DNVGKKAESS SKDRDDDHRT LSEIDQWLYL FAAEDDHLRN NFATQQQPPS 60 SLMSGFSREM EMSAIVSALT HVVAGNVPHH QPGGGDGSGE GTSNSSSSSG QKRRRAVEDG 120 GGGKALKAAN TLTVDQYFSG GTSTSKVKEA SSNMSGPGPT YEYTTTATTN SEASSFSGDQ 180 PRRRYRGVRQ RPWGKWAAEI RDPFKAARVW LGTFDNAESA ARAYDEAALR FRGNKAKLNF 240 PENVKLVRPA STSAAAALSQ TAVQRPTQSK NSGSTTPLLP IRPASEQTIP IHSQPLMQQY 300 NLNYSEMGRQ QQQFQQQQHQ QSLDLYNQMS FPLRFGHTGG SVMQSTSSSS SHSRPLFSSG 360 AAVQPQPELV SETGYLQDIQ WPSESDKPSN NYNHSPSS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 5e-22 | 183 | 244 | 1 | 63 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Negative regulator of the abscisic acid (ABA) signaling pathway involved in seed germination and in responses to stress conditions. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16227468}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00584 | DAP | Transfer from AT5G64750 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10026540m |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA) and stresses, including cold, drought and salt (PubMed:16227468, PubMed:26961720). Triggered by YY1 (PubMed:26961720). {ECO:0000269|PubMed:16227468, ECO:0000269|PubMed:26961720}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006280583.1 | 0.0 | ethylene-responsive transcription factor ABR1 | ||||
Swissprot | Q9FGF8 | 1e-179 | ABR1_ARATH; Ethylene-responsive transcription factor ABR1 | ||||
TrEMBL | R0EXA9 | 0.0 | R0EXA9_9BRAS; Uncharacterized protein | ||||
STRING | XP_006280583.1 | 0.0 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9118 | 21 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64750.1 | 1e-144 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Carubv10026540m |
Entrez Gene | 17876356 |
Publications ? help Back to Top | |||
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