PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10026395m | ||||||||
Common Name | CARUB_v10026317mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | HRT-like | ||||||||
Protein Properties | Length: 449aa MW: 50668.8 Da PI: 9.243 | ||||||||
Description | HRT-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HRT-like | 57.7 | 2e-18 | 245 | 275 | 1 | 31 |
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 +CGvile+G +C+r+PvkgRKRC eHKG+R+ Carubv10026395m 245 VCGVILENGGFCNRSPVKGRKRCIEHKGQRV 275 7*****************************7 PP | |||||||
2 | HRT-like | 45.4 | 1.4e-14 | 307 | 336 | 2 | 31 |
HRT-like 2 CGviledGsvCkrqPvkgRKRCeeHKGmRi 31 CGvil d C++ +v+gRKRCe HKGmRi Carubv10026395m 307 CGVILPDMESCSKRAVQGRKRCEDHKGMRI 336 *****************************7 PP | |||||||
3 | HRT-like | 30.8 | 5.1e-10 | 378 | 404 | 2 | 28 |
HRT-like 2 CGviledGsvCkrqPvkgRKRCeeHKG 28 C ++++ G +C+r+P kg KRC++HK Carubv10026395m 378 CEATTKKGLPCTRSPPKGSKRCWQHKE 404 999***********************7 PP | |||||||
4 | HRT-like | 55.5 | 9.4e-18 | 418 | 447 | 2 | 31 |
HRT-like 2 CGviledGsvCkrqPvkgRKRCeeHKGmRi 31 CGv+l +G +C+r+PvkgRKRCeeHKGmRi Carubv10026395m 418 CGVKLCNGLTCERSPVKGRKRCEEHKGMRI 447 *****************************7 PP |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:2000033 | Biological Process | regulation of seed dormancy process | ||||
GO:0097100 | Molecular Function | supercoiled DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 449 aa Download sequence Send to blast |
MVLIGSNDWE DFKNGKDGVC RYRVQNLPRK SFPGLYELGV AVIDSDQGRK LEPDDVLAAY 60 LGQAESVRSR LQRYGRSGAH LRNVYSLFDC EIVESPVKKA ATGGLFEDIF SKGGSILYRW 120 APMGSKRVAE ATEGMLLSTF DYAWNKGSNG ERRQLDLLKK LGDRKFMSKR KPGISRVLFP 180 FLSNQVGIRI KGEKHVLKEE RKLSSDVDEE KSTNFLSSIL KLTRSRPQPV SDRFDEMDGS 240 CTDSVCGVIL ENGGFCNRSP VKGRKRCIEH KGQRVCRVSP EKQTPPPNLE IFTGQDRHSH 300 KDSDVRCGVI LPDMESCSKR AVQGRKRCED HKGMRINAFL FLLNQTDREK TVKDDNSSDL 360 ESHRELNEEE EEALTRFCEA TTKKGLPCTR SPPKGSKRCW QHKEKTSPIC FQPEIIACGV 420 KLCNGLTCER SPVKGRKRCE EHKGMRIT* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator involved in the regulation of cell differentiation in meristems. Probably regulates the expression of various KNAT genes involved in the maintenance of the cells in an undifferentiated, merismastic state. Plays a role in the regulation of gibberellin 20 oxidase and the gibberellin-regulated protein GASA4. Localizes in the nucleus during the cellular differentiation state and may act via a single strand cutting domain (PubMed:17991462). Transcriptional regulator required for the induction of dormancy during late seed development. Interacts genetically with FUS3 and may be component of the same regulatory pathway during embryogenesis. Binds both linear and supercoiled DNA without sequence preference (PubMed:22226340). {ECO:0000269|PubMed:17991462, ECO:0000269|PubMed:22226340}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10026395m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB013392 | 0.0 | AB013392.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MIK19. | |||
GenBank | CP002688 | 0.0 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023636991.1 | 0.0 | protein EFFECTOR OF TRANSCRIPTION 2 isoform X2 | ||||
Swissprot | F4K933 | 0.0 | ET2_ARATH; Protein EFFECTOR OF TRANSCRIPTION 2 | ||||
TrEMBL | R0EVU3 | 0.0 | R0EVU3_9BRAS; Uncharacterized protein | ||||
STRING | XP_006280390.1 | 0.0 | (Capsella rubella) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56780.1 | 0.0 | effector of transcription2 |
Link Out ? help Back to Top | |
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Phytozome | Carubv10026395m |
Entrez Gene | 17874667 |