PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10026299m
Common NameCARUB_v10026299mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family C2H2
Protein Properties Length: 490aa    MW: 54231 Da    PI: 5.1274
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10026299mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.30.00181103123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      + C  Cgk+Fs+   L  H r H
  Carubv10026299m  81 HICCECGKRFSSGKALGGHKRIH 103
                      68****************99998 PP
2zf-C2H210.90.0014347369123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C  C+ksF++   L  H  +H
  Carubv10026299m 347 HVCVTCNKSFTSYQALGGHRASH 369
                      79**********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.6E-578104IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576677.43E-879154No hitNo description
PROSITE profilePS5015711.26181108IPR007087Zinc finger, C2H2
SMARTSM003550.1881103IPR015880Zinc finger, C2H2-like
PfamPF139121.6E-781103IPR007087Zinc finger, C2H2
PROSITE patternPS00028083103IPR007087Zinc finger, C2H2
SMARTSM003557.3132154IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280134154IPR007087Zinc finger, C2H2
SuperFamilySSF576671.96E-6346369No hitNo description
PROSITE profilePS501579.556347374IPR007087Zinc finger, C2H2
SMARTSM003550.37347369IPR015880Zinc finger, C2H2-like
PfamPF139124.4E-10347371IPR007087Zinc finger, C2H2
PROSITE patternPS000280349369IPR007087Zinc finger, C2H2
SuperFamilySSF576671.96E-6411438No hitNo description
PROSITE profilePS501578.974416438IPR007087Zinc finger, C2H2
SMARTSM003550.23416438IPR015880Zinc finger, C2H2-like
PfamPF139124.1E-13416439IPR007087Zinc finger, C2H2
PROSITE patternPS000280418438IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 490 aa     Download sequence    Send to blast
MDQFGGHKTN CKFSLGRPRF GSIKVKIPRI QPFVAKEGKE VEDDDETKII EEEEEDNHEA  60
KSMDLEEGGV EEEEEAEEKK HICCECGKRF SSGKALGGHK RIHVLETRKF SMVRPKMVSG  120
MVGRSERGEL EVGCCVCFKK FTSMKALYGH MRFHPDRGWK GVLPPLPHPV LGNSSSSTLS  180
IDDHDDELIS SDYDDDDDDD DFDDDYENSE LWDHKETFDD HDDELKETFQ GWSKKGKRGR  240
RSVLNVDGSD LKEPPPEDKK DDDANALLFL ATTAEAAASL NTAEAYNSHS VEEKNLEMVK  300
KRKKKKKSLS EMEKEVKEPS STDHDHQLDQ VVVAAAEEGG AGVREKHVCV TCNKSFTSYQ  360
ALGGHRASHN KVKIVENHQA RANAEASLLG IEAIVTGLTS AQGSNTSLNS GNNGDHICNI  420
CHKSFPTGQA LGGHKRCHWT GPVSTEAAQT AAPAGASFSQ ATETVQEVKK LKRTFMEFDL  480
NELPPNEDE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1299303KKRKK
2300306KRKKKKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10026299m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0230290.0AB023029.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K24C1.
GenBankAB4937940.0AB493794.1 Arabidopsis thaliana At5g56200 gene for hypothetical protein, partial cds, clone: RAAt5g56200.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006280373.10.0zinc finger protein ZAT4
TrEMBLR0EWN00.0R0EWN0_9BRAS; Uncharacterized protein
STRINGXP_006280373.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66182443
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56200.11e-152C2H2 family protein