PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10026091m
Common NameCARUB_v10026052mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family ARR-B
Protein Properties Length: 618aa    MW: 68082 Da    PI: 5.0379
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10026091mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like93.71.5e-29163216155
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      kpr++W++eLH++Fv+av+qL G +kA+Pk+il+lm+++gLt+e+v+SHLQkYRl
  Carubv10026091m 163 KPRVVWSQELHQKFVNAVQQL-GLDKAVPKKILDLMNIEGLTRENVASHLQKYRL 216
                      79*******************.********************************8 PP
2Response_reg50.41.2e-1720107189
                      EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHH CS
     Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalea 89 
                      vl vdD+p+ ++ l+++l + +y +v+ + ++++ale+l+e+   +Dl++ D+emp+ dG++ll++    e++lp+i+++ah++ + + + 
  Carubv10026091m  20 VLAVDDNPTCLRKLEELLLRCKY-HVTKTMESKKALEMLRENSnmFDLVISDVEMPDADGFKLLET--GLEMDLPVIMLSAHSDYDSVMKG 107
                      799********************.***************999999*******************97..55567***********9888765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521721.99E-2017107IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23009.1E-2217108No hitNo description
SMARTSM004483.6E-1218124IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011026.96819128IPR001789Signal transduction response regulator, receiver domain
PfamPF000729.0E-1520107IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.07E-1042107No hitNo description
SuperFamilySSF466891.88E-20160220IPR009057Homeodomain-like
PROSITE profilePS5129411.954160219IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.6E-30161221IPR009057Homeodomain-like
TIGRFAMsTIGR015572.0E-26163216IPR006447Myb domain, plants
PfamPF002493.2E-9165215IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009736Biological Processcytokinin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 618 aa     Download sequence    Send to blast
MEFKSAEEGR IEKFPVGMRV LAVDDNPTCL RKLEELLLRC KYHVTKTMES KKALEMLREN  60
SNMFDLVISD VEMPDADGFK LLETGLEMDL PVIMLSAHSD YDSVMKGTSR QLLPPSQSDL  120
VPGVSKKRKD KVNDSGDDDD SDREEDDGEG SEQDGDESGT RKKPRVVWSQ ELHQKFVNAV  180
QQLGLDKAVP KKILDLMNIE GLTRENVASH LQKYRLYLKK IDEGQQQNMT PDAFGTRDSS  240
YFQMAQLDGL RDFTATRQLP SSGLLSRSHL TKIQPHLYSS INLQGMNSSG FIQQGHHQSS  300
SNSANPFGTY HSTLPPRIQN VNLFQRTSSP LESLQFPRSK CSAYMGDFKS IGDRPIGGGF  360
VDSCMSYGSS STSLPSASTN TLMLQGNYTQ PLHTVSSVNQ PCIEKTLSNA ASPNISVQGL  420
SRLPSQSWQG NLNTTRFLSN SSPLNHAFFP DQVTCAGNNL GDCSSLVSAG NPGGGMQCEP  480
QLLGGFLQNI NSLDGQKWEQ QNCSMVNNTF GNVEYPLPGD NMVFRENNAA RSKGVDESLM  540
SPIENSGNVN SQEYVGKPST MVSAEMMKSG KPENAHIDNQ NQHDVFDDIM NEMMKQEENN  600
GMVSVAARFG FDSFPPP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A5e-24161221363ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00057PBMTransfer from AT5G58080Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10026091m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0240290.0AB024029.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K21L19.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006280153.10.0two-component response regulator ARR18 isoform X2
SwissprotQ9FGT70.0ARR18_ARATH; Two-component response regulator ARR18
TrEMBLR0EW390.0R0EW39_9BRAS; Two-component response regulator
STRINGXP_006280154.10.0(Capsella rubella)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58080.10.0response regulator 18