PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10026054m
Common NameCARUB_v10026052mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family ARR-B
Protein Properties Length: 653aa    MW: 72104.8 Da    PI: 5.7429
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10026054mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like93.61.6e-29198251155
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      kpr++W++eLH++Fv+av+qL G +kA+Pk+il+lm+++gLt+e+v+SHLQkYRl
  Carubv10026054m 198 KPRVVWSQELHQKFVNAVQQL-GLDKAVPKKILDLMNIEGLTRENVASHLQKYRL 251
                      79*******************.********************************8 PP
2Response_reg52.52.7e-18201241109
                      EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHT CS
     Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealka 92 
                      vl vdD+p+ ++ l+++l + +y +v+ + ++++ale+l+e+   +Dl++ D+emp+ dG++ll++    e++lp+i  +   + + + + +  
  Carubv10026054m  20 VLAVDDNPTCLRKLEELLLRCKY-HVTKTMESKKALEMLRENSnmFDLVISDVEMPDADGFKLLETG--LEMDLPVITHS---DYDSVMKGILH 107
                      799********************.***************999999******************9975..45669999655...6667******* PP

                      TESEEEESS--HHHHHH CS
     Response_reg  93 GakdflsKpfdpeelvk 109
                      Ga d+l+Kp++ +el +
  Carubv10026054m 108 GACDYLVKPVALKELQN 124
                      ***********999975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363924.2E-1661651IPR017053Response regulator B-type, plant
SuperFamilySSF521721.71E-2517132IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23009.2E-2917149No hitNo description
SMARTSM004485.6E-1818126IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011030.75219130IPR001789Signal transduction response regulator, receiver domain
PfamPF000726.2E-1620124IPR001789Signal transduction response regulator, receiver domain
CDDcd001566.51E-1542129No hitNo description
SuperFamilySSF466892.06E-20195255IPR009057Homeodomain-like
PROSITE profilePS5129411.954195254IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.9E-30196256IPR009057Homeodomain-like
TIGRFAMsTIGR015572.2E-26198251IPR006447Myb domain, plants
PfamPF002493.4E-9200250IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009736Biological Processcytokinin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 653 aa     Download sequence    Send to blast
MEFKSAEEGR IEKFPVGMRV LAVDDNPTCL RKLEELLLRC KYHVTKTMES KKALEMLREN  60
SNMFDLVISD VEMPDADGFK LLETGLEMDL PVITHSDYDS VMKGILHGAC DYLVKPVALK  120
ELQNIWHHVV KKNIKSYAKN IGTSRQLLPP SQSDLVPGVS KKRKDKVNDS GDDDDSDREE  180
DDGEGSEQDG DESGTRKKPR VVWSQELHQK FVNAVQQLGL DKAVPKKILD LMNIEGLTRE  240
NVASHLQKYR LYLKKIDEGQ QQNMTPDAFG TRDSSYFQMA QLDGLRDFTA TRQLPSSGLL  300
SRSHLTKIQP HLYSSINLQG MNSSGFIQQG HHQSSSNSAN PFGTYHSTLP PRIQNVNLFQ  360
RTSSPLESLQ FPRSKCSAYM GDFKSIGDRP IGGGFVDSCM SYGSSSTSLP SASTNTLMLQ  420
GNYTQPLHTV SSVNQPCIEK TLSNAASPNI SVQGLSRLPS QSWQGNLNTT RFLSNSSPLN  480
HAFFPDQVTC AGNNLGDCSS LVSAGNPGGG MQCEPQLLGG FLQNINSLDG QKWEQQNCSM  540
VNNTFGNVEY PLPGDNMVFR ENNAARSKGV DESLMSPIEN SGNVNSQEYV GKPSTMVSAE  600
MMKSGKPENA HIDNQNQHDV FDDIMNEMMK QEENNGMVSV AARFGFDSFP PP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A8e-24196256363ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00057PBMTransfer from AT5G58080Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10026054m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0240290.0AB024029.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K21L19.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006280154.10.0two-component response regulator ARR18 isoform X1
SwissprotQ9FGT70.0ARR18_ARATH; Two-component response regulator ARR18
TrEMBLR0GL800.0R0GL80_9BRAS; Two-component response regulator
STRINGXP_006280154.10.0(Capsella rubella)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58080.10.0response regulator 18