PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Carubv10025660m | ||||||||
Common Name | CARUB_v10025660mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 315aa MW: 35320.3 Da PI: 7.2619 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.8 | 0.00017 | 40 | 62 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C + F++ L H+++H Carubv10025660m 40 YTCSFCRREFRSAQALGGHMNVH 62 9********************99 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.85E-6 | 37 | 66 | No hit | No description |
SMART | SM00355 | 0.0061 | 40 | 62 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 11.219 | 40 | 67 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 2.1E-5 | 40 | 63 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 42 | 62 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 315 aa Download sequence Send to blast |
MEKPGDFWIP KKSNKESSSW EELAFAEDDA AGSLWPPRSY TCSFCRREFR SAQALGGHMN 60 VHRRDRARLK QADDDQYLFS KPSSSPEYPS HNDSDDIRET SCYTLVFNSK PNYFKKTQHS 120 CVIDLSSSSS SSPSLPYLTP SSRVSSGLPE KQNTFSSSPS FLVEPSNNSS YIPSSSPWSS 180 PSTFVDHKRC DLYAIPGMEG DKKRKIENDV PKIGHKAKLS LGNSCTTDLS VSMNLVIHQS 240 FPITAHDSDE ELERGDIRKR RRRHESPSQP SIFISSLSCK SDIITRKEEI KHKGDCFEDL 300 DLELRLGTDP PKGI* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1njq_A | 6e-13 | 35 | 62 | 2 | 29 | superman protein |
2l1o_A | 6e-13 | 35 | 62 | 2 | 29 | Transcriptional regulator SUPERMAN |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 257 | 261 | RKRRR |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor that may regulate cell division and growth. {ECO:0000269|PubMed:12154136}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Carubv10025660m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006296475.1 | 0.0 | zinc finger protein 10 | ||||
Swissprot | O80942 | 1e-169 | ZFP10_ARATH; Zinc finger protein 10 | ||||
TrEMBL | R0HZ73 | 0.0 | R0HZ73_9BRAS; Uncharacterized protein | ||||
STRING | XP_006296475.1 | 0.0 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM11047 | 25 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G37740.1 | 1e-151 | zinc-finger protein 10 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Carubv10025660m |
Entrez Gene | 17890165 |