PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10025477m | ||||||||
Common Name | CARUB_v10025477mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | LBD | ||||||||
Protein Properties | Length: 194aa MW: 21538.7 Da PI: 7.1484 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 125 | 3.7e-39 | 17 | 117 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +C aCk+lrrkC+k+Cv+apyf aeq +++fa+vhk+FGasn +k+l +lp ++r da+ +l+yeA ar+rdPvyG+vg++++lq+q+++l+ae Carubv10025477m 17 PCGACKFLRRKCVKGCVFAPYFDAEQgTARFAAVHKVFGASNASKMLLRLPLHKRFDAVVTLCYEAMARLRDPVYGSVGHLFSLQHQVMNLQAE 110 7***********************9989****************************************************************** PP DUF260 94 lallkee 100 la+++++ Carubv10025477m 111 LAHVQAR 117 **99976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.102 | 16 | 118 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 4.3E-38 | 17 | 115 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 194 aa Download sequence Send to blast |
MMTGNVNGGG RGGGEGPCGA CKFLRRKCVK GCVFAPYFDA EQGTARFAAV HKVFGASNAS 60 KMLLRLPLHK RFDAVVTLCY EAMARLRDPV YGSVGHLFSL QHQVMNLQAE LAHVQARLST 120 FQRFPLQSPQ QMQPPPYDLV HNDEYPMEQP SNLSSVWEEE HLLQDGTEDG EFQEMAMQYI 180 SRYLPAVKLP ACT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 9e-36 | 13 | 115 | 7 | 110 | LOB family transfactor Ramosa2.1 |
5ly0_B | 9e-36 | 13 | 115 | 7 | 110 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00313 | DAP | Transfer from AT2G45410 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10025477m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB473856 | 0.0 | AB473856.1 Arabidopsis thaliana ASL23 mRNA for ASYMMETRIC LEAVES2-like 23 protein, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006296305.1 | 1e-144 | LOB domain-containing protein 19 | ||||
Swissprot | O22132 | 1e-113 | LBD19_ARATH; LOB domain-containing protein 19 | ||||
TrEMBL | R0HYN6 | 1e-143 | R0HYN6_9BRAS; Uncharacterized protein | ||||
STRING | XP_006296305.1 | 1e-144 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM108 | 28 | 359 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45410.1 | 1e-106 | LOB domain-containing protein 19 |
Link Out ? help Back to Top | |
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Phytozome | Carubv10025477m |
Entrez Gene | 17888092 |