PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10025360m
Common NameCARUB_v10025360mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family bHLH
Protein Properties Length: 576aa    MW: 64035.8 Da    PI: 6.3134
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10025360mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.75.1e-14402448455
                      HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                      +h e+Er+RR+++N++f  Lr+++P+ +      K++Ka+ L  A+ YIk+Lq
  Carubv10025360m 402 NHVEAERQRREKLNQRFYALRSVVPNiS------KMDKASLLGDAISYIKELQ 448
                      799***********************66......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.1E-5148239IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474592.62E-19397462IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.936398447IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.68E-15401452No hitNo description
PfamPF000101.9E-11402448IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.6E-19402463IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.3E-18404453IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009611Biological Processresponse to wounding
GO:0009737Biological Processresponse to abscisic acid
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 576 aa     Download sequence    Send to blast
MNTSDLGWDD EEKPVVSAVL GHLASDFLRA NSNSNQNLFL VMGTDDNLNK KLSSLVDWPN  60
SENFSWNYAI FWQQTMSRSG QQVLGWGDGC CREPNEAEES KALRSYHFNN LGLEEETWQD  120
MRKRVLQKLH RLFGGSDEDN YALSLEKVTA TEIFFLASMY FFFNHGEGGP GRCYASGKHV  180
WLSDAVNSES DYCFRSFMAK SAGIRTIVMV PTDAGVLELG SVWSLPENIG LVKSVQALFM  240
RRVAQPLTVT SNANMSGGIH KLFGQDLNNL EHGARAYPKK LDVRRNLDER ITPQSREGCN  300
HNKGQTFGGY TSQRQDVIVQ ENVNVVLDDN KYKMQTEFAG SSVAASSNPS TNTQLEKSDS  360
CTVKRPAALL AASGAGTVSV VDEKRPRKRG RKPANGREEP LNHVEAERQR REKLNQRFYA  420
LRSVVPNISK MDKASLLGDA ISYIKELQEK VKIMEAERVR TESSLSESNP MATRTVESPE  480
VDIQVVNEEV VVRVISPFDS HPASRIIQAI RNSEVSVMES KLSLAEETIF HTFVVKSNNG  540
SDPLTKEKLI AAVYPEISST QQPLPSSSSQ VSGDF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A3e-29396467273Transcription factor MYC2
5gnj_B3e-29396467273Transcription factor MYC2
5gnj_E3e-29396467273Transcription factor MYC2
5gnj_F3e-29396467273Transcription factor MYC2
5gnj_G3e-29396467273Transcription factor MYC2
5gnj_I3e-29396467273Transcription factor MYC2
5gnj_M3e-29396467273Transcription factor MYC2
5gnj_N3e-29396467273Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1383391KRPRKRGRK
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Regulates positively abscisic acid (ABA) response. Confers drought tolerance and sensitivity to ABA. {ECO:0000269|PubMed:17828375}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00101PBMTransfer from AT2G46510Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10025360m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Transiently by ABA and polyethylene glycol (PEG). {ECO:0000269|PubMed:17828375}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0064180.0AC006418.4 Arabidopsis thaliana chromosome 2 clone F13A10 map CIC06C03, complete sequence.
GenBankAC0065260.0AC006526.8 Arabidopsis thaliana chromosome 2 clone F11C10 map CIC02E07, complete sequence.
GenBankCP0026850.0CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006293427.20.0transcription factor ABA-INDUCIBLE bHLH-TYPE
SwissprotQ9ZPY80.0AIB_ARATH; Transcription factor ABA-INDUCIBLE bHLH-TYPE
TrEMBLR0HM720.0R0HM72_9BRAS; Uncharacterized protein
STRINGXP_006293427.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM37582759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46510.10.0ABA-inducible BHLH-type transcription factor
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Sasaki-Sekimoto Y,Saito H,Masuda S,Shirasu K,Ohta H
    Comprehensive analysis of protein interactions between JAZ proteins and bHLH transcription factors that negatively regulate jasmonate signaling.
    Plant Signal Behav, 2014. 9(1): p. e27639
    [PMID:24394987]
  3. Fonseca S, et al.
    bHLH003, bHLH013 and bHLH017 are new targets of JAZ repressors negatively regulating JA responses.
    PLoS ONE, 2014. 9(1): p. e86182
    [PMID:24465948]
  4. Thatcher LF, et al.
    Characterization of a JAZ7 activation-tagged Arabidopsis mutant with increased susceptibility to the fungal pathogen Fusarium oxysporum.
    J. Exp. Bot., 2016. 67(8): p. 2367-86
    [PMID:26896849]
  5. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]