PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10024972m | ||||||||
Common Name | CARUB_v10024972mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | WRKY | ||||||||
Protein Properties | Length: 295aa MW: 33024.5 Da PI: 6.9763 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 85 | 7.2e-27 | 110 | 170 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 +D+y+WrKYGqKe+ +s+fprsY+rCt++ gC+++k+v++ +++p++++itY g H+++ Carubv10024972m 110 EDKYAWRKYGQKEILNSKFPRSYFRCTHKptqGCKATKQVQKLEKNPEMFQITYVGYHTCT 170 7***************************9999***************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.0E-25 | 101 | 170 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.35E-24 | 104 | 170 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.0E-36 | 109 | 171 | IPR003657 | WRKY domain |
Pfam | PF03106 | 9.0E-25 | 110 | 169 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 19.761 | 110 | 172 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0031347 | Biological Process | regulation of defense response | ||||
GO:1900056 | Biological Process | negative regulation of leaf senescence | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 295 aa Download sequence Send to blast |
MDSNSNNTKS IKRKVVDQLV QGFEFATQLQ LLLSHQQHSN HRLVSGSEMS GITGSWNASC 60 GDDSAAPASC NGGDSGDSKK KRLGVGKGKR GCYTRKKRLH TRVLEARSSE DKYAWRKYGQ 120 KEILNSKFPR SYFRCTHKPT QGCKATKQVQ KLEKNPEMFQ ITYVGYHTCT ASDQTQAKVE 180 PIDHGIIMDS DKPLDATSAQ NHVNAKIQEE DNNISSVTEV SIVKEEEKNN GDLYKDYCEG 240 SSTDGDLSLV WQELMMFDDH HQNQYCFGEV STTSHHHLAF VDNDQFSSFF DSCS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 2e-19 | 106 | 169 | 5 | 68 | OsWRKY45 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 79 | 97 | KKRLGVGKGKRGCYTRKKR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Together with WRKY70, negative regulator of developmental senescence, probably via the regulation of several senescence-associated markers genes (PubMed:22268143). Positive regulator of EDS1-dependent defense against E.amylovora (PubMed:22316300). In collaboration with WRKY70, prevents stomatal closure and, consequently, osmotic stress tolerance (PubMed:23815736). Together with WRKY46 and WRKY70, promotes brassinosteroid (BR)-regulated plant growth but prevent drought response by modulating gene expression (PubMed:28576847). Negative regulator of SA biosynthesis (PubMed:28837631). Prevents defense response to the necrotrophic pathogens P.carotovorum and B.cinerea, but promotes defense against biotrophic/hemibiotrophic pathogens P.syringae pv. tomato (Pst) DC3000, probably by regulating negatively the jasmonic acid (JA)/ethylene (ET) and positively the salicylic acid (SA) signaling pathways (PubMed:28837631). {ECO:0000250|UniProtKB:Q9SUP6, ECO:0000269|PubMed:22268143, ECO:0000269|PubMed:22316300, ECO:0000269|PubMed:23815736, ECO:0000269|PubMed:28576847, ECO:0000269|PubMed:28837631, ECO:0000303|PubMed:28837631}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10024972m |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by reactive oxygen species (ROS) and salicylic acid (SA) (PubMed:22268143). Early but transient accumulation after osmotic stress (e.g. polyethylene glycol, PEG) (PubMed:23815736). Up-regulated by E.amylovora (PubMed:22316300). {ECO:0000269|PubMed:22268143, ECO:0000269|PubMed:22316300, ECO:0000269|PubMed:23815736}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023640590.1 | 0.0 | LOW QUALITY PROTEIN: probable WRKY transcription factor 54 | ||||
Swissprot | Q93WU8 | 1e-152 | WRK54_ARATH; Probable WRKY transcription factor 54 | ||||
TrEMBL | R0G0N5 | 0.0 | R0G0N5_9BRAS; Uncharacterized protein | ||||
STRING | XP_006295843.1 | 0.0 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM11362 | 16 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40750.1 | 1e-132 | WRKY DNA-binding protein 54 |
Link Out ? help Back to Top | |
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Phytozome | Carubv10024972m |
Entrez Gene | 17889788 |