PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10024870m
Common NameCARUB_v10024870mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family LBD
Protein Properties Length: 287aa    MW: 31088 Da    PI: 8.7736
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10024870mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260111.18.2e-3554162199
           DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal..........peeeredamsslvyeAearardPvyGavgvilklq 84 
                      +CaaCk+lrr+Ca++C+++pyf  ++p+kfa+vhk+FGasnv+k+l  l           e++r da++slvyeA+ r+rdP+yG++g i++lq
  Carubv10024870m  54 PCAACKLLRRRCAEECPFSPYFSPHEPHKFAAVHKVFGASNVSKMLLGLklkvlssqevGESQRGDAANSLVYEANLRLRDPIYGCMGAISALQ 147
                      7********************************************8544333333333378899****************************** PP

           DUF260  85 qqleqlkaelallke 99 
                      +++++l++el ++++
  Carubv10024870m 148 HHIQSLQTELTTVRT 162
                      **********99886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.67853164IPR004883Lateral organ boundaries, LOB
PfamPF031953.2E-3654161IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016020Cellular Componentmembrane
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MNGNNNREGF GEYYEIVKKI KKDPTFETTT DHAVMGIRRH VAVPPGTTLN TVTPCAACKL  60
LRRRCAEECP FSPYFSPHEP HKFAAVHKVF GASNVSKMLL GLKLKVLSSQ EVGESQRGDA  120
ANSLVYEANL RLRDPIYGCM GAISALQHHI QSLQTELTTV RTDILRYKYR EATTITSLQN  180
NNSFNNTTTT SSLSCDHHHG LASAILLPPP PPPPPPPRPP RLLSSHSHQP APPPTPPASL  240
PSPSMVLSSS SSSNSSATNS MYNPPPSSAA GYSNSMSSDN NVHYFD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-38471754122LOB family transfactor Ramosa2.1
5ly0_B3e-38471754122LOB family transfactor Ramosa2.1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00283DAPTransfer from AT2G30340Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10024870m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023640753.11e-150LOB domain-containing protein 13 isoform X1
SwissprotQ9AT611e-131LBD13_ARATH; LOB domain-containing protein 13
TrEMBLR0HX360.0R0HX36_9BRAS; Uncharacterized protein
STRINGXP_006295750.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19272781
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30340.11e-110LOB domain-containing protein 13
Publications ? help Back to Top
  1. Cho C,Jeon E,Pandey SK,Ha SH,Kim J
    LBD13 positively regulates lateral root formation in Arabidopsis.
    Planta, 2019. 249(4): p. 1251-1258
    [PMID:30627888]