PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Carubv10024738m

Common Name

CARUB_v10024738mg

Organism

Capsella rubella

Taxonomic ID

81985

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

CAMTA

Protein Properties

Length: 1033aa MW: 115567 Da PI: 5.7352

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Carubv10024738m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	182.5	4.8e-57	20	136	3	118
CG-1 3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfq 95 +e ++rwl++ ei++iL+n++++++++e++t+p+sgs+++++rk++ryfrkDG++w+kkkdgktv+E+he+LK g+v+vl+cyYah+++n++fq Carubv10024738m 20 SEaRHRWLRPPEICEILQNYQRFQISTEPPTTPSSGSVFMFDRKVLRYFRKDGHNWRKKKDGKTVKEAHERLKAGSVDVLHCYYAHGQDNENFQ 113 4449**************************************************************************************** PP CG-1 96 rrcywlLeeelekivlvhylevk 118 rr+ywlL+eel++iv+vhylevk Carubv10024738m 114 RRSYWLLQEELSHIVFVHYLEVK 136 ******************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	82.708	15	141	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	3.4E-85	18	136	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	1.0E-49	21	135	IPR005559	CG-1 DNA-binding domain
Gene3D	G3DSA:2.60.40.10	2.6E-4	464	552	IPR013783	Immunoglobulin-like fold
SuperFamily	SSF81296	1.87E-16	466	551	IPR014756	Immunoglobulin E-set
PROSITE profile	PS50297	16.388	628	754	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	2.33E-15	641	757	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	2.0E-15	642	757	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	2.73E-11	642	754	No hit	No description
PROSITE profile	PS50088	9.164	695	727	IPR002110	Ankyrin repeat
SuperFamily	SSF52540	1.51E-8	850	903	IPR027417	P-loop containing nucleoside triphosphate hydrolase
SMART	SM00015	0.92	852	874	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	9.029	854	882	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	0.0041	855	873	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	0.0011	875	897	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	9.468	876	900	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	1.2E-4	878	897	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009409	Biological Process	response to cold
GO:0010150	Biological Process	leaf senescence
GO:0042742	Biological Process	defense response to bacterium
GO:0050832	Biological Process	defense response to fungus
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005516	Molecular Function	calmodulin binding

Sequence ? help Back to Top
Protein Sequence Length: 1033 aa Download sequence Send to blast
MAEARRFSPV SELDVGQILS EARHRWLRPP EICEILQNYQ RFQISTEPPT TPSSGSVFMF 60 DRKVLRYFRK DGHNWRKKKD GKTVKEAHER LKAGSVDVLH CYYAHGQDNE NFQRRSYWLL 120 QEELSHIVFV HYLEVKGSRV STSVNRMQRS GDAARSPQEA GEALTSEHDG YASCSFNQND 180 HSNFSQTTDS ASVNGFHTPE LEDAESAYNQ HGSSIVYSHQ KLQQPATGGN LTGYNPYYQV 240 SLTPRDSYQK EFRTIPITDS LVMVDKSKNI NSPGVTNGLK NRKSIDSQTW EEILGNCGSG 300 AEGIPLQPNS EHEVLDQILQ SSSFTMQDFA SLQESMIKSR NQQFNSGVTS ANAMWFQGQD 360 IEPNAISNLA SNEKAPYLST MKQHLLDGAL GEAGLKKMDS FNRWMSKELG DVGVIADANE 420 SFTQSSSRTY WEEVESEDGS NGHNSRRDLD GYIMSPSLSK EQLFSINEFS PSWAYVGCEV 480 VVFVTGKFLK TREEAEIGEW SCMFGQTEVP ADVIANGVLQ CVAPMHEAGR VPFYVTCSNR 540 LACSEVREFE YKVVESQIYD KETDDESTIE ILEARFVKLL CSKSESSTPV SGNDSDLSQV 600 SEKISLLLFE NDDQLDQMLM NEISQENMKK SLLQDVLKES LHSWLLQKIA EGGKGPSVLD 660 EGGQGVLHFA ASLGYNWALE PTILAGVSVD FRDVNGWTAL HWAAFFGRER IIGSLIALGA 720 APGTLTDPNP DFPSGSTPSD LAYANGHKGI AGYLSEYALR AHVSLLSLND KNAETVESAP 780 SPSSSSLTDS LTAVRNATQA AARIHQVFRA QSFQKKQLKE FGDRKLGMSE ERALSMLAPK 840 THKSGRAHSD DSVQAAAIRI QNKFRGYKGR KDYLITRQRI IKIQAHVRGY QVRKNYRKII 900 WSVGILEKVI LRWRRKGAGL RGFKSDALVD KMQDGTEKEE DDDFFKQGRK QTEERLQKAL 960 ARVKSMVQYP EARDQYRRLL NVVNDIQESK VEKALENSEG ATCFDDDLID IEALLGDDDT 1020 LMLPMSSSLW SN*

Sequence ? help Back to Top

Protein Sequence Length: 1033 aa Download sequence Send to blast

MAEARRFSPV SELDVGQILS EARHRWLRPP EICEILQNYQ RFQISTEPPT TPSSGSVFMF  60
DRKVLRYFRK DGHNWRKKKD GKTVKEAHER LKAGSVDVLH CYYAHGQDNE NFQRRSYWLL  120
QEELSHIVFV HYLEVKGSRV STSVNRMQRS GDAARSPQEA GEALTSEHDG YASCSFNQND  180
HSNFSQTTDS ASVNGFHTPE LEDAESAYNQ HGSSIVYSHQ KLQQPATGGN LTGYNPYYQV  240
SLTPRDSYQK EFRTIPITDS LVMVDKSKNI NSPGVTNGLK NRKSIDSQTW EEILGNCGSG  300
AEGIPLQPNS EHEVLDQILQ SSSFTMQDFA SLQESMIKSR NQQFNSGVTS ANAMWFQGQD  360
IEPNAISNLA SNEKAPYLST MKQHLLDGAL GEAGLKKMDS FNRWMSKELG DVGVIADANE  420
SFTQSSSRTY WEEVESEDGS NGHNSRRDLD GYIMSPSLSK EQLFSINEFS PSWAYVGCEV  480
VVFVTGKFLK TREEAEIGEW SCMFGQTEVP ADVIANGVLQ CVAPMHEAGR VPFYVTCSNR  540
LACSEVREFE YKVVESQIYD KETDDESTIE ILEARFVKLL CSKSESSTPV SGNDSDLSQV  600
SEKISLLLFE NDDQLDQMLM NEISQENMKK SLLQDVLKES LHSWLLQKIA EGGKGPSVLD  660
EGGQGVLHFA ASLGYNWALE PTILAGVSVD FRDVNGWTAL HWAAFFGRER IIGSLIALGA  720
APGTLTDPNP DFPSGSTPSD LAYANGHKGI AGYLSEYALR AHVSLLSLND KNAETVESAP  780
SPSSSSLTDS LTAVRNATQA AARIHQVFRA QSFQKKQLKE FGDRKLGMSE ERALSMLAPK  840
THKSGRAHSD DSVQAAAIRI QNKFRGYKGR KDYLITRQRI IKIQAHVRGY QVRKNYRKII  900
WSVGILEKVI LRWRRKGAGL RGFKSDALVD KMQDGTEKEE DDDFFKQGRK QTEERLQKAL  960
ARVKSMVQYP EARDQYRRLL NVVNDIQESK VEKALENSEG ATCFDDDLID IEALLGDDDT  1020
LMLPMSSSLW SN*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3'. Binds calmodulin in a calcium-dependent manner in vitro (PubMed:12218065). Regulates transcriptional activity in response to calcium signals (Probable). Involved in freezing tolerance in association with CAMTA1 and CAMTA2 (PubMed:23581962). Required for the cold-induced expression of DREB1B/CBF1, DREB1C/CBF2, ZAT12 and GOLS3 (PubMed:19270186). Involved in response to cold. Contributes together with CAMTA5 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). Involved together with CAMTA2 and CAMTA4 in the positive regulation of a general stress response (GSR) (PubMed:25039701). Involved in the regulation of GSR amplitude downstream of MEKK1 (PubMed:25157030). Involved in the regulation of a set of genes involved in defense responses against pathogens (PubMed:18298954). Involved in the regulation of both basal resistance and systemic acquired resistance (SAR) (PubMed:21900483). Acts as negative regulator of plant immunity (PubMed:19122675, PubMed:21900483, PubMed:22345509, PubMed:28407487). Binds to the promoter of the defense-related gene EDS1 and represses its expression (PubMed:19122675). Binds to the promoter of the defense-related gene NDR1 and represses its expression (PubMed:22345509). Involved in defense against insects (PubMed:23072934, PubMed:22371088). Required for tolerance to the generalist herbivore Trichoplusia ni, and contributes to the positive regulation of genes associated with glucosinolate metabolism (PubMed:23072934). Required for tolerance to Bradysia impatiens larvae. Mediates herbivore-induced wound response (PubMed:22371088). Required for wound-induced jasmonate accumulation (PubMed:23072934, PubMed:22371088). Involved in the regulation of ethylene-induced senescence by binding to the promoter of the senescence-inducer gene EIN3 and repressing its expression (PubMed:22345509). {ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:18298954, ECO:0000269\|PubMed:19122675, ECO:0000269\|PubMed:19270186, ECO:0000269\|PubMed:21900483, ECO:0000269\|PubMed:22345509, ECO:0000269\|PubMed:22371088, ECO:0000269\|PubMed:23072934, ECO:0000269\|PubMed:23581962, ECO:0000269\|PubMed:25039701, ECO:0000269\|PubMed:25157030, ECO:0000269\|PubMed:28351986, ECO:0000269\|PubMed:28407487, ECO:0000305\|PubMed:11925432}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00042	PBM	Transfer from AT2G22300	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Carubv10024738m

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, salt, wounding, ethylene and methyl jasmonate (PubMed:11162426, PubMed:12218065). Induced by infection with the fungal pathogen Golovinomyces cichoracearum (powdery mildew) and the bacterial pathogen Pseudomonas syringae pv tomato strain DC3000 (PubMed:22345509). {ECO:0000269\|PubMed:11162426, ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:22345509}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF506697	0.0	AF506697.1 Arabidopsis thaliana calmodulin-binding transcription factor SR1 (SR1) mRNA, complete cds.
GenBank	AY510025	0.0	AY510025.1 Arabidopsis thaliana ethylene-induced calmodulin-binding protein 1 mRNA, complete cds.
GenBank	BT002459	0.0	BT002459.1 Arabidopsis thaliana Unknown protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006295625.1	0.0	calmodulin-binding transcription activator 3 isoform X2
Swissprot	Q8GSA7	0.0	CMTA3_ARATH; Calmodulin-binding transcription activator 3
TrEMBL	R0HWU6	0.0	R0HWU6_9BRAS; Uncharacterized protein
STRING	XP_006295625.1	0.0	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8601	25	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22300.2	0.0	signal responsive 1

Link Out ? help Back to Top
Phytozome	Carubv10024738m
Entrez Gene	17888533

Publications ? help Back to Top
Zhang L,Du L,Shen C,Yang Y,Poovaiah BW Regulation of plant immunity through ubiquitin-mediated modulation of Ca(2+) -calmodulin-AtSR1/CAMTA3 signaling. Plant J., 2014. 78(2): p. 269-81 [PMID:24528504] Benn G, et al. A key general stress response motif is regulated non-uniformly by CAMTA transcription factors. Plant J., 2014. 80(1): p. 82-92 [PMID:25039701] Rahman H,Yang J,Xu YP,Munyampundu JP,Cai XZ Phylogeny of Plant CAMTAs and Role of AtCAMTAs in Nonhost Resistance to Xanthomonas oryzae pv. oryzae. Front Plant Sci, 2016. 7: p. 177 [PMID:26973658] Benn G, et al. Plastidial metabolite MEcPP induces a transcriptionally centered stress-response hub via the transcription factor CAMTA3. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(31): p. 8855-60 [PMID:27432993] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986] Lolle S, et al. Matching NLR Immune Receptors to Autoimmunity in camta3 Mutants Using Antimorphic NLR Alleles. Cell Host Microbe, 2017. 21(4): p. 518-529.e4 [PMID:28407487] Kim YS, et al. CAMTA-Mediated Regulation of Salicylic Acid Immunity Pathway Genes in Arabidopsis Exposed to Low Temperature and Pathogen Infection. Plant Cell, 2017. 29(10): p. 2465-2477 [PMID:28982964] Jacob F, et al. A dominant-interfering camta3 mutation compromises primary transcriptional outputs mediated by both cell surface and intracellular immune receptors in Arabidopsis thaliana. New Phytol., 2018. 217(4): p. 1667-1680 [PMID:29226970]