PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10024477m
Common NameCARUB_v10024477mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family ERF
Protein Properties Length: 263aa    MW: 29511.6 Da    PI: 5.341
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10024477mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.92.5e-1872130155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpse.ng....krkrfslgkfgtaeeAakaaiaarkkleg 55 
                      ++++GVr++  +g+WvAeIr+p++ +g    ++kr +lg+f ta eAa a+++a+  ++g
  Carubv10024477m  72 CRFRGVRQRV-WGKWVAEIREPVShRGanstRSKRLWLGTFATAAEAALAYDRAASVMYG 130
                      689*****99.**********888777877666*********************987776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.9E-1372130IPR001471AP2/ERF domain
CDDcd000181.05E-1972139No hitNo description
SuperFamilySSF541719.15E-1973139IPR016177DNA-binding domain
SMARTSM003802.2E-3073144IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.0E-2773139IPR001471AP2/ERF domain
PROSITE profilePS5103221.6873138IPR001471AP2/ERF domain
PRINTSPR003673.6E-97485IPR001471AP2/ERF domain
PRINTSPR003673.6E-9104120IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0034605Biological Processcellular response to heat
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MDKEDNGSKQ SSSASVGSSR RRRRAVEPVE ATLQRWGKEE DGEGLERVRR VQAKGSKKGC  60
MRGKGGPENP VCRFRGVRQR VWGKWVAEIR EPVSHRGANS TRSKRLWLGT FATAAEAALA  120
YDRAASVMYG RYARLNFPEG LLENEPGGEM KKKDEAGSSG SYWFEPDNVS EARDGMIETK  180
DGKDYLLYDN HIELGQDKIE NLDPTDTKIV ETMAYNNPAV KAEEDYSFDR FELDSGLLYN  240
EPEGPSYYQG GGSDSYLEFF RF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-1574138663ATERF1
3gcc_A6e-1574138663ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates abscisic acid-inducible transcription. Involved in the regulation of plant development and tolerance to abiotic stresses (PubMed:21069430). {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:21069430}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00298DAPTransfer from AT2G38340Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10024477m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) treatment (PubMed:11798174). Induced by salt, heat and drought stresses. {ECO:0000269|PubMed:11798174}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006295384.10.0dehydration-responsive element-binding protein 2E
SwissprotO809171e-109DRE2E_ARATH; Dehydration-responsive element-binding protein 2E
TrEMBLR0FYX80.0R0FYX8_9BRAS; Uncharacterized protein
STRINGXP_006295384.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM142491823
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38340.11e-100ERF family protein
Publications ? help Back to Top
  1. Huang KC,Lin WC,Cheng WH
    Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
    BMC Plant Biol., 2018. 18(1): p. 40
    [PMID:29490615]