PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Carubv10024208m

Common Name

CARUB_v10024208mg

Organism

Capsella rubella

Taxonomic ID

81985

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

YABBY

Protein Properties

Length: 165aa MW: 18396 Da PI: 9.6388

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Carubv10024208m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	196.9	9e-61	5	153	4	170
YABBY 4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvs 97 sseq+Cy+ CnfCn +lavsvP +slf +vtvrCGhCt+l svn+a a q l+ + ++++ v + s+s+ ++ Carubv10024208m 5 AMSSEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAALQSLSRPNF-----------------QATNYAVPDYGSTSRGHT 81 5789***************************************99988887776653.................222222222333333333 PP YABBY 98 seklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 ++ s+ +++ ++++ v+rPPekrqrvPsayn+fikeeiqrika+nPdishreafs+aaknWahfP+ihfgl Carubv10024208m 82 KTP-SRISTRTITEQRIVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGL 153 222.34455566666679***************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	2.7E-69	7	153	IPR006780	YABBY protein
SuperFamily	SSF47095	3.67E-8	97	146	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	1.0E-4	100	147	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009944	Biological Process	polarity specification of adaxial/abaxial axis
GO:1902183	Biological Process	regulation of shoot apical meristem development
GO:2000024	Biological Process	regulation of leaf development

Sequence ? help Back to Top
Protein Sequence Length: 165 aa Download sequence Send to blast
MANSAMSSEQ LCYIPCNFCN IVLAVSVPCS SLFDIVTVRC GHCTNLWSVN MAAALQSLSR 60 PNFQATNYAV PDYGSTSRGH TKTPSRISTR TITEQRIVNR PPEKRQRVPS AYNQFIKEEI 120 QRIKANNPDI SHREAFSTAA KNWAHFPHIH FGLMLESNKQ AKLA*

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269\|PubMed:19837869}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Carubv10024208m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK119091	0.0	AK119091.1 Arabidopsis thaliana At2g26580 mRNA for unknown protein, complete cds, clone: RAFL21-44-F19.
GenBank	BT003734	0.0	BT003734.1 Arabidopsis thaliana At2g26580 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006295133.1	1e-121	axial regulator YABBY 5
Swissprot	Q8GW46	1e-116	YAB5_ARATH; Axial regulator YABBY 5
TrEMBL	R0FYE4	1e-120	R0FYE4_9BRAS; Uncharacterized protein
STRING	Cagra.11302s0003.1.p	1e-121	(Capsella grandiflora)
STRING	XP_006295133.1	1e-121	(Capsella rubella)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26580.2	1e-119	YABBY family protein

Link Out ? help Back to Top
Phytozome	Carubv10024208m
Entrez Gene	17888431

Publications ? help Back to Top
Husbands AY,Benkovics AH,Nogueira FT,Lodha M,Timmermans MC The ASYMMETRIC LEAVES Complex Employs Multiple Modes of Regulation to Affect Adaxial-Abaxial Patterning and Leaf Complexity. Plant Cell, 2015. 27(12): p. 3321-35 [PMID:26589551]