PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10024051m
Common NameCARUB_v10024051mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family ERF
Protein Properties Length: 214aa    MW: 23641.6 Da    PI: 4.7643
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10024051mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.72.2e-162775355
              AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     y+G r ++ +g+Wv+eIr+p++   + r++lg+f tae+Aa+a++ a+++++g
  Carubv10024051m 27 YRGARMRS-WGKWVSEIREPRK---KSRIWLGTFPTAEMAARAHDVAALSIKG 75
                     89999888.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.7E-102675IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.6E-312684IPR001471AP2/ERF domain
SMARTSM003801.3E-342689IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-202684IPR016177DNA-binding domain
PROSITE profilePS5103222.9982683IPR001471AP2/ERF domain
PRINTSPR003673.2E-102738IPR001471AP2/ERF domain
CDDcd000181.58E-312785No hitNo description
PRINTSPR003673.2E-104965IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MGGSHGSDMD CSSTKKRKEK AKETVVYRGA RMRSWGKWVS EIREPRKKSR IWLGTFPTAE  60
MAARAHDVAA LSIKGNSAIL NFPELAEFLP RPISMSPQDI QAAATKAALM DFETGPFHLQ  120
DKTSHTSCET EKIEKGSSSS ASSASMLSEE LGEIVELPIL DNNVRNDFAL FDSLEGIGSM  180
PQWLDATKDD FTYGDDSILL DPLLQESFLW NYE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-1827831572Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10024051m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By drought. {ECO:0000269|PubMed:16307362}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006294983.11e-158ethylene-responsive transcription factor ERF042
SwissprotQ52QU11e-101ERF42_ARATH; Ethylene-responsive transcription factor ERF042
TrEMBLR0FYP11e-156R0FYP1_9BRAS; Uncharacterized protein
STRINGXP_006294983.11e-157(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18528283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25820.11e-102ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]