PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10024004m | ||||||||
Common Name | CARUB_v10024004mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | B3 | ||||||||
Protein Properties | Length: 227aa MW: 26597.6 Da PI: 7.6711 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 31.3 | 3.6e-10 | 110 | 201 | 3 | 87 |
EE-..-HHHHT.T-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--.TT-EEEEEE-SS CS B3 3 kvltpsdvlks.grlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLk.egDfvvFkldgr 87 k+l+ sdv + +rl+lp++f++e ++++ ++ + ++ ++ ++ + ++ +k+ +lt+GWkeFv L + Dfv+ + ++ Carubv10024004m 110 KQLKLSDVDGNqSRLMLPRQFVAESivpfleaSENPSVGINVLVYRPDRKVQHMIFKLWKRA--PFLTSGWKEFVTKYSLMkTSDFVTVWVFRH 201 67777888766699*******98889****99667778889999998886655555448886..89*************97699*998654444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 8.2E-13 | 108 | 208 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.55E-13 | 108 | 212 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.21E-11 | 108 | 211 | No hit | No description |
SMART | SM01019 | 1.0E-5 | 108 | 211 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence Send to blast |
MVFKQKEKDA EVVIAARILM HISQAQAPEE DDTDDEVEFE DESTPLLQVS QRADTNQPKK 60 VENQNMMRID KKERFSEEKQ RLIQTWYRAE PEPPEIFDEV PRPFNKPLKK QLKLSDVDGN 120 QSRLMLPRQF VAESIVPFLE ASENPSVGIN VLVYRPDRKV QHMIFKLWKR APFLTSGWKE 180 FVTKYSLMKT SDFVTVWVFR HLKTRKLCFA IDHIRFPLME NQVGSS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10024004m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC254595 | 0.0 | AC254595.1 Capsella rubella clone CAP16-M18, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010505731.1 | 3e-72 | PREDICTED: putative B3 domain-containing protein At4g03170 | ||||
Swissprot | Q9ZR14 | 3e-62 | Y4317_ARATH; Putative B3 domain-containing protein At4g03170 | ||||
TrEMBL | R0FYK2 | 1e-165 | R0FYK2_9BRAS; Uncharacterized protein | ||||
STRING | XP_006294948.1 | 1e-166 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2103 | 18 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G03170.1 | 3e-64 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Carubv10024004m |
Entrez Gene | 17889659 |
Publications ? help Back to Top | |||
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