PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10023994m
Common NameCARUB_v10023994mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family BBR-BPC
Protein Properties Length: 230aa    MW: 25146.7 Da    PI: 10.4981
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10023994mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind268.34e-823022996301
        GAGA_bind  96 pvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderska 189
                       +++ ++++t+ +d +q    +q ++    +  ++ l+++ +++ ++ ++ +++k+++q+ +k++++k+ +kk+  ++s k++k++s  +++k+
  Carubv10023994m  30 FHSYIAVPNTTGVDLSQV---SQASPVESMMVPQSRLSHPITVDYRNGVESVEQKSTNQSLSKALKPKTPRKKR--ATSDKSKKTPSI-PETKR 117
                      345788999999998888...44444444455677777777777888888888888888888888887777777..556667778886.699** PP

        GAGA_bind 190 ekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpv 283
                      ekk++d++++  s+D+s +P+PvCsCtG++r+CYkWG+GGWqS+CCt++iS+yPLP+st+r+gaR+agrKmS+ga+ klL +La+eGy+ls+pv
  Carubv10023994m 118 EKKNLDINIDISSFDTSEVPPPVCSCTGVSRVCYKWGMGGWQSSCCTISISTYPLPMSTTRPGARLAGRKMSNGAYVKLLVRLAGEGYNLSHPV 211
                      ********************************************************************************************** PP

        GAGA_bind 284 DLkdhWAkHGtnkfvtir 301
                      DLk+hWA+HGtnkfvti+
  Carubv10023994m 212 DLKNHWARHGTNKFVTIK 229
                      *****************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012268.4E-1001229IPR010409GAGA-binding transcriptional activator
PfamPF062173.3E-7070229IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MNSFPSQNLM LSASKANKDA GLRTSNANWF HSYIAVPNTT GVDLSQVSQA SPVESMMVPQ  60
SRLSHPITVD YRNGVESVEQ KSTNQSLSKA LKPKTPRKKR ATSDKSKKTP SIPETKREKK  120
NLDINIDISS FDTSEVPPPV CSCTGVSRVC YKWGMGGWQS SCCTISISTY PLPMSTTRPG  180
ARLAGRKMSN GAYVKLLVRL AGEGYNLSHP VDLKNHWARH GTNKFVTIK*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10023994m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU0899610.0EU089961.1 Arabidopsis arenosa GAGA-binding transcriptional activator (BBR/BPC7) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006294940.11e-171protein BASIC PENTACYSTEINE7
SwissprotO822861e-136BPC7_ARATH; Protein BASIC PENTACYSTEINE7
TrEMBLR0HUS91e-169R0HUS9_9BRAS; Uncharacterized protein
STRINGXP_006294940.11e-170(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM136742127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35550.41e-138basic pentacysteine 7