PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10023989m
Common NameCARUB_v10023989mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family LBD
Protein Properties Length: 232aa    MW: 25404.7 Da    PI: 4.764
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10023989mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260135.91.5e-42541531100
           DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                      +CaaCk+lrr+Ca++Cvlapyfp ++p kf ++h++FGasn++k+l++lpe++r+da++s+vyeA ar+rdPvyG++g i +lq+q+++l+a+l
  Carubv10023989m  54 PCAACKILRRRCAEKCVLAPYFPPTDPMKFTIAHRVFGASNIIKFLQELPESQRTDAVNSMVYEAGARMRDPVYGCAGAIYHLQRQVSELQAQL 147
                      7********************************************************************************************* PP

           DUF260  95 allkee 100
                      a+++ e
  Carubv10023989m 148 AKTQVE 153
                      *99865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.22853154IPR004883Lateral organ boundaries, LOB
PfamPF031954.9E-4254151IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MLKMEINGGV ATPTASAVAV AETTTPVSSP SPTSSPPPPP SPQQPPQPPV VLSPCAACKI  60
LRRRCAEKCV LAPYFPPTDP MKFTIAHRVF GASNIIKFLQ ELPESQRTDA VNSMVYEAGA  120
RMRDPVYGCA GAIYHLQRQV SELQAQLAKT QVELVGMQLQ RSSLLELVYK MEQTKLSAQE  180
QGQHKMSFES SFESGDEFIS SPDEESNDLG FLEDNNNNNN SSMSWWDPLW T*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A7e-41461553112LOB family transfactor Ramosa2.1
5ly0_B7e-41461553112LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10023989m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4738400.0AB473840.1 Arabidopsis thaliana ASL7 mRNA for ASYMMETRIC LEAVES2-like 7 protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006294934.11e-172LOB domain-containing protein 11
SwissprotQ9SK081e-141LBD11_ARATH; LOB domain-containing protein 11
TrEMBLR0FXT91e-171R0FXT9_9BRAS; Uncharacterized protein
STRINGXP_006294934.11e-172(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM114128105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28500.11e-111LOB domain-containing protein 11