PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10023826m
Common NameCARUB_v10023826mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family B3
Protein Properties Length: 277aa    MW: 32011.3 Da    PI: 6.1177
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10023826mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B341.81.9e-13271051697
                      EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
               B3  16 lvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                      + lp  f++++ + ++ ++++t+++ +sg++W+++++ ++ s++++l++GWk+  k+ +L e  f+vF++dg++ f  ++ v+
  Carubv10023826m  27 MNLP--FVSNMISGTPLPRKVTVRSvSSGNTWRMEMTTNRESDTVFLRDGWKKIFKDENLIEPIFLVFEFDGSRVF--HFCVY 105
                      4444..77666444568999*****9999********9*******************************9998877..66665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.1E-1113107IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-1413107IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.46114108IPR003340B3 DNA binding domain
CDDcd100175.17E-1014105No hitNo description
SMARTSM010195.7E-1114108IPR003340B3 DNA binding domain
PfamPF023625.9E-1030104IPR003340B3 DNA binding domain
SuperFamilySSF1019367.65E-6186262IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.1E-4189274IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MKTQGSNGDL SQKFFRVYIP NVTEDNMNLP FVSNMISGTP LPRKVTVRSV SSGNTWRMEM  60
TTNRESDTVF LRDGWKKIFK DENLIEPIFL VFEFDGSRVF HFCVYEHSSM CKRMRSHIEQ  120
EVIEVESDEE CEDDDGDDVT VEDEESTKGS DEWPGRKERG GTSRKTDSHD KLDEYLDDEL  180
NPSFPVDLTQ PRLRIPSILI KDYNLTFSNL VIVRDKIGKM KRRISVWKNR SVYLNGLSSV  240
IRRNHVKPGD KMLCELRMVD GYHGLVHEIK VHIIKG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10023826m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006294773.10.0B3 domain-containing protein REM22
SwissprotQ9STF11e-128REM22_ARATH; B3 domain-containing protein REM22
TrEMBLR0FY440.0R0FY44_9BRAS; Uncharacterized protein
STRINGXP_006294773.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16649810
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46770.11e-119B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]