PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT3G46770.1
Common NameT6H20.200
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family B3
Protein Properties Length: 276aa    MW: 31951.2 Da    PI: 10.2433
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT3G46770.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B338.12.6e-1216109692
                  ..-HHHHTT-EE--HHH.HTT.........---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
           B3   6 tpsdvlksgrlvlpkkfaeeh.........ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                  ++  vlk  r+++p++ a+++         +g k+ ++++t+++ +sg+ W++++  + ++++++l++GWk+ vk+ ++ e  f+ F++dg   f++
  AT3G46770.1  16 IQDTVLKFFRVYIPNQTADDMnlplvsdkiSG-KPLPRKVTVKSvSSGNIWRMEM--KANGNTVFLRDGWKKIVKDENVTEPIFLEFEFDGYGVFHF 109
                  56677888999*******9999***9999743.45999******9999*******..*******************************998777743 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086310.88411115IPR003340B3 DNA binding domain
SuperFamilySSF1019361.88E-1516114IPR015300DNA-binding pseudobarrel domain
CDDcd100175.06E-816112No hitNo description
Gene3DG3DSA:2.40.330.105.5E-1216112IPR015300DNA-binding pseudobarrel domain
PfamPF023624.5E-1017108IPR003340B3 DNA binding domain
SMARTSM010196.3E-1123115IPR003340B3 DNA binding domain
SuperFamilySSF1019363.34E-6183262IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009009anatomyplant embryo
PO:0009010anatomyseed
PO:0009031anatomysepal
PO:0009032anatomypetal
PO:0009046anatomyflower
PO:0009047anatomystem
PO:0009052anatomyflower pedicel
PO:0020003anatomyplant ovule
PO:0020100anatomyhypocotyl
PO:0025022anatomycollective leaf structure
PO:0001078developmental stageplant embryo cotyledonary stage
PO:0001081developmental stagemature plant embryo stage
PO:0001185developmental stageplant embryo globular stage
PO:0004507developmental stageplant embryo bilateral stage
PO:0007611developmental stagepetal differentiation and expansion stage
PO:0007616developmental stageflowering stage
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MEENSSKKKL SETMSIQDTV LKFFRVYIPN QTADDMNLPL VSDKISGKPL PRKVTVKSVS  60
SGNIWRMEMK ANGNTVFLRD GWKKIVKDEN VTEPIFLEFE FDGYGVFHFC VYEYGSMCKR  120
MRSPMEKEVI KVDSEEDVLV GNEESTKGLE ESPRRGGTSR RRAKLKTKSH KIYEHLDNKL  180
NPSFPVDMTQ NRTRIPSLLI KDYNLTFPNM VIMRDKIGIL KRRIVIWKNR SVYLNGIGSI  240
IRRNHVKPGN EVVFELKMVN GYHGLVHEIK VHIIKA
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
At.538020.0flower
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1453327740.0
Genevisible252495_at0.0
Expression AtlasAT3G46770-
AtGenExpressAT3G46770-
ATTED-IIAT3G46770-
Function -- GeneRIF ? help Back to Top
  1. spatio-temporal expression pattern of REM22 during the early stages of stamen development
    [PMID: 21948714]
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT3G46770.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT3G46770
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL0968590.0AL096859.2 Arabidopsis thaliana DNA chromosome 3, BAC clone T6H20.
GenBankCP0026860.0CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_190261.10.0AP2/B3-like transcriptional factor family protein
SwissprotQ9STF10.0REM22_ARATH; B3 domain-containing protein REM22
TrEMBLA0A178V6L40.0A0A178V6L4_ARATH; Uncharacterized protein
STRINGAT3G46770.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16649810
Publications ? help Back to Top
  1. Swaminathan K,Peterson K,Jack T
    The plant B3 superfamily.
    Trends Plant Sci., 2008. 13(12): p. 647-55
    [PMID:18986826]
  2. Skinner DJ,Gasser CS
    Expression-based discovery of candidate ovule development regulators through transcriptional profiling of ovule mutants.
    BMC Plant Biol., 2009. 9: p. 29
    [PMID:19291320]
  3. Romanel E, et al.
    Reproductive Meristem22 is a unique marker for the early stages of stamen development.
    Int. J. Dev. Biol., 2011. 55(6): p. 657-64
    [PMID:21948714]
  4. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]