PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10023816m
Common NameCARUB_v10023816mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family C2H2
Protein Properties Length: 279aa    MW: 30996.2 Da    PI: 8.418
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10023816mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.90.0015214235323
                      ETTTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   3 CpdCgksFsrksnLkrHirt.H 23 
                      Cp C+  Fs+  +L+ H  + H
  Carubv10023816m 214 CPQCNAKFSSVTTLVEHVEKtH 235
                      *****************99888 PP
2zf-C2H2201.9e-06250272223
                      EETTTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                      +Cp+C++ F+++ +L++Hi + H
  Carubv10023816m 250 VCPKCSRGFRDPVDLVNHIERdH 272
                      7******************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1183105.49E-12457No hitNo description
PROSITE profilePS510397.821056IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.101.0E-101152IPR000058Zinc finger, AN1-type
PfamPF014282.9E-131349IPR000058Zinc finger, AN1-type
SMARTSM001548.1E-71352IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.103.9E-1091142IPR000058Zinc finger, AN1-type
SuperFamilySSF1183101.7E-893141No hitNo description
PROSITE profilePS510398.18498147IPR000058Zinc finger, AN1-type
PfamPF014284.1E-8101140IPR000058Zinc finger, AN1-type
SMARTSM001540.0089101142IPR000058Zinc finger, AN1-type
SMARTSM003550.033212235IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.349212240IPR007087Zinc finger, C2H2
PROSITE patternPS000280214235IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.2E-4216235IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003557.9249272IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.829249277IPR007087Zinc finger, C2H2
PROSITE patternPS000280251272IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MGTPEFPDLG KHCSVDVCKQ IDFLPFTCDR CLQVFCLDHR SYMKHSCPKG DREDVTVVIC  60
PLCAKGVRLN PNEDPNITWE KHVNTDCDPS NYEKATKKKK CPVPRCKEQL TFSNTIKCRD  120
CNIDHCLKHR FGPDHTCPGP RKLPFMGFLS SGTSRKEAKT ARPNKASAST SSSSSSRWSN  180
LLSSAEAGIS RLGNDISQKL QFSSSSNDGI IEICPQCNAK FSSVTTLVEH VEKTHERNKI  240
QSHGKVTIDV CPKCSRGFRD PVDLVNHIER DHRGTSNA*
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in environmental stress response. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00306DAPTransfer from AT2G41835Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10023816m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0652720.0AY065272.1 Arabidopsis thaliana unknown protein (At2g41835) mRNA, complete cds.
GenBankAY0966200.0AY096620.1 Arabidopsis thaliana unknown protein (At2g41835) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006293510.10.0zinc finger AN1 and C2H2 domain-containing stress-associated protein 11
SwissprotQ8VZ420.0SAP11_ARATH; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 11
TrEMBLR0HR080.0R0HR08_9BRAS; Uncharacterized protein
STRINGXP_006293510.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM39082754
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41835.11e-179C2H2 family protein