PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10023769m
Common NameCARUB_v10023769mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family ERF
Protein Properties Length: 291aa    MW: 32579.3 Da    PI: 5.2928
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10023769mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.28.8e-1895145256
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                      +y+GVr+++ +g+++AeIrdps+   r+r +lg+f taeeAa  +++a+ +l+g+
  Carubv10023769m  95 KYRGVRQRP-WGKFAAEIRDPST---RTRLWLGTFATAEEAAIGYDRAAIRLKGH 145
                      8********.**********976...5*************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.5E-2995151IPR001471AP2/ERF domain
PfamPF008472.9E-1195145IPR001471AP2/ERF domain
SMARTSM003801.7E-3595158IPR001471AP2/ERF domain
CDDcd000183.45E-3195151No hitNo description
SuperFamilySSF541718.5E-2095152IPR016177DNA-binding domain
PROSITE profilePS5103221.69495152IPR001471AP2/ERF domain
PRINTSPR003676.3E-1096107IPR001471AP2/ERF domain
PRINTSPR003676.3E-10118134IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048825Biological Processcotyledon development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MKTRERKVKY TVHRKITSLP FNGFPKTVKI IVTDPCATDS SSDEDTDNIY VPPRVKRFVE  60
EIRFCGDDDG AKPARKAKNK ATTETARDLV KPVVKYRGVR QRPWGKFAAE IRDPSTRTRL  120
WLGTFATAEE AAIGYDRAAI RLKGHNAQTN FLTPPPPTEA FPKTPVIDLE TVSGCDSARE  180
SQTSLCSPTS VLRFDHNEET EYRTEPMKRS SASGEAKEET LSSDPFFLPD LFRTGDSFWD  240
SKFTPDPLFL DNSTVSGDND TNLSETFPLG VIGDFSSWDV DEFFQDHFVG *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A9e-2196151359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A9e-2196151662ATERF1
3gcc_A9e-2196151662ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10023769m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cytokinins. {ECO:0000269|PubMed:16832061}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006294723.10.0ethylene-responsive transcription factor CRF5
SwissprotO823391e-148CRF5_ARATH; Ethylene-responsive transcription factor CRF5
TrEMBLR0FY070.0R0FY07_9BRAS; Uncharacterized protein
STRINGXP_006294723.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25782571
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46310.11e-141cytokinin response factor 5
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Striberny B, et al.
    Cytokinin Response Factor 5 has transcriptional activity governed by its C-terminal domain.
    Plant Signal Behav, 2017. 12(2): p. e1276684
    [PMID:28045578]