PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10023618m
Common NameCARUB_v10023618mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family bHLH
Protein Properties Length: 328aa    MW: 36467.7 Da    PI: 6.8036
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10023618mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.36.3e-09187234455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +h+ +Er RR++iN ++  L+el+P +    +k    a +L + +++++sLq
  Carubv10023618m 187 NHSLAERARREKINARMKLLQELVPGC----DKIQGTALVLDEIINHVQSLQ 234
                      79************************9....889****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.3E-15181252IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.86E-9181238No hitNo description
Gene3DG3DSA:4.10.280.103.0E-15183251IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.634183233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-6187234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.7E-8189239IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MDLTHGFGAR SGIGPVTGLE SLNFSDEFRQ LVTTTPPENS GGSFTALLEM PVTQAMELLH  60
FTDSSSSQTN ITKLAGDISP HPFGTLTFPS NSLLLDRAAR FSVIATEQNG YISGETPSSS  120
ANLDRVKAEP AETDSVSENQ NSKQNQNKRK EREKKAKSSM KKTKSSVEED KLPYVHVRAR  180
RGQATDNHSL AERARREKIN ARMKLLQELV PGCDKIQGTA LVLDEIINHV QSLQRQVEML  240
SMRLAAVNPR IDFNLDTILA SENGSLMDGS FNGESYHQLQ QWPFDGYHQP EWGREEDQHQ  300
ADFPMGSTTL QPNQKISEPK RCRRRSP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10023618m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1766340.0AK176634.1 Arabidopsis thaliana mRNA for putative bHLH transcription factor (bHLH048), complete cds, clone: RAFL25-17-F11.
GenBankAY0654110.0AY065411.1 Arabidopsis thaliana unknown protein (At2g42300) mRNA, complete cds.
GenBankAY0965210.0AY096521.1 Arabidopsis thaliana unknown protein (At2g42300) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023640740.10.0transcription factor bHLH48
SwissprotQ8VZ020.0BH048_ARATH; Transcription factor bHLH48
TrEMBLR0FXN30.0R0FXN3_9BRAS; Uncharacterized protein
STRINGXP_006294583.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25762771
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42300.11e-177bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Li Y,Wang H,Li X,Liang G,Yu D
    Two DELLA-interacting proteins bHLH48 and bHLH60 regulate flowering under long-day conditions in Arabidopsis thaliana.
    J. Exp. Bot., 2017. 68(11): p. 2757-2767
    [PMID:28591805]