PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10023610m
Common NameCARUB_v10023610mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family bHLH
Protein Properties Length: 329aa    MW: 36440.1 Da    PI: 5.831
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10023610mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.31.2e-12139185455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       h  +Er+RR+++N+++  L  llP +     kK +Ka++Le A++++k+Lq
  Carubv10023610m 139 EHVLAERKRRQKLNERLIALSALLPGL-----KKTDKATVLEDAIKHLKQLQ 185
                      5889***********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.745135184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.67E-16136198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.1E-16139198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-10139185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.50E-12140189No hitNo description
SMARTSM003531.9E-14141190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007029Biological Processendoplasmic reticulum organization
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MEDSSFMDLM IDTDEYLIDD WESDFPIWGE TNNTKPGSES GSGTETGFEL VVERPTKQMK  60
TSTNNKMNTT TSSSSPSSSS SSGSRTSQVI SFGSPDTKTN PVETSLNFSN QVSMDQKMRS  120
ERKDCVSNGG RREPHLLKEH VLAERKRRQK LNERLIALSA LLPGLKKTDK ATVLEDAIKH  180
LKQLQEKVKK LEEERVGTKK MDQSVILVKR SQVYLDDDSS SYSSTCSAAS PLSSSSDEVS  240
ILKQTMPMIE ARVSDRDLLI RVHCDNNNKG CLIKILSSLE KFSLDVVNSF SLPFGNSTLV  300
ITILTKMDNT VSQPVEEVVK NIRLALAE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1143148ERKRRQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that regulates the expression of at least NAI2, PYK10 and PBP1. Required for and mediates the formation of endoplasmic reticulum bodies (ER bodies). Involved in the symbiotic interactions with the endophytes of the Sebacinaceae fungus family, such as Piriformospora indica and Sebacina. {ECO:0000269|PubMed:12581307, ECO:0000269|PubMed:15155889, ECO:0000269|PubMed:15919674, ECO:0000269|PubMed:18248598, ECO:0000269|PubMed:18467340, ECO:0000269|PubMed:18780803}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10023610m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006294574.10.0transcription factor NAI1
SwissprotQ8S3F11e-176BH020_ARATH; Transcription factor NAI1
TrEMBLR0FWX60.0R0FWX6_9BRAS; Uncharacterized protein
STRINGXP_006294574.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM136071726
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22770.11e-145bHLH family protein
Publications ? help Back to Top
  1. Hakenjos JP, et al.
    ML3 is a NEDD8- and ubiquitin-modified protein.
    Plant Physiol., 2013. 163(1): p. 135-49
    [PMID:23903439]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Yoshii M,Yamamoto A,Kagaya Y,Takeda S,Hattori T
    The Arabidopsis transcription factor NAI1 is required for enhancing the active histone mark but not for removing the repressive mark on PYK10, a seedling-specific gene upon embryonic-to-postgerminative developmental phase transition.
    Plant Signal Behav, 2015. 10(12): p. e1105418
    [PMID:26479492]