 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Carubv10023603m |
| Common Name | CARUB_v10023603mg |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
|
| Family |
bZIP |
| Protein Properties |
Length: 331aa MW: 34306.9 Da PI: 9.3078 |
| Description |
bZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Carubv10023603m | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | bZIP_1 | 28.8 | 2.7e-09 | 301 | 325 | 1 | 25 |
XXXXCHHHCHHHHHHHHHHHHHHHH CS
bZIP_1 1 ekelkrerrkqkNReAArrsRqRKk 25
++elkr+rrkq+NRe+ArrsR+RK+
Carubv10023603m 301 DRELKRQRRKQSNRESARRSRLRKQ 325
689*********************9 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 331 aa
Download sequence Send
to blast |
MASSENIEKS SKEKEPKTPP SSSAAPPASQ EPSSAVSAGM ATPDWTGFQA YSPMPPPHGY 60
VASSPQPHPY MWGVQHMMPP YGTPPHPYVA MYPPGGMYAH PSMPPGSYPY SPYAMPSPNG 120
MTEASGNSTG GTEGDGKQSE VKEKLPIKRS RGSLGSLNMI TGKNNEPGKN SGAAANGAYS 180
KSGESASDGS SEGSDGNSQN DSGSGQDGKD ASENGGTANG PRNGSVGTPL LPVSQTVPIM 240
PMTAAGVPGP PTNLNIGMDY WGAPTSSAIP GMHGKVSTPV PGVVAPVSRD GGHSQPWLQD 300
DRELKRQRRK QSNRESARRS RLRKQVLNIP *
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 317 | 323 | RRSRLRK |
| 2 | 317 | 324 | RRSRLRKQ |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional activator that binds to the G-box motif (5'-CACGTG-3') and other cis-acting elements with 5'-ACGT-3' core, such as Hex, C-box and as-1 motifs. Possesses high binding affinity to G-box, much lower affinity to Hex and C-box, and little affinity to as-1 element (PubMed:18315949). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control (Probable). Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional repressor in light-regulated expression of LHCB2.4. Binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:18315949, ECO:0000269|PubMed:22718771, ECO:0000305|PubMed:18315949}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK353164 | 0.0 | AK353164.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-26-I15. |
| Best hit in Arabidopsis thaliana ? help
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| Hit ID |
E-value |
Description |
| AT2G35530.1 | 1e-158 | basic region/leucine zipper transcription factor 16 |
