PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10023590m
Common NameCARUB_v10023556mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family ERF
Protein Properties Length: 335aa    MW: 37238 Da    PI: 4.4546
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10023590mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.99.1e-1770120155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      +gy+GVr++  +g+WvAeIr+p   g r  r +lg+f +  eAa a+++a+++++g
  Carubv10023590m  70 CGYRGVRQRI-WGKWVAEIREP---G-RgNRLWLGTFSSSHEAALAYDEAARAMYG 120
                      79*****998.**********8...4.359***********************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.26E-3170129No hitNo description
PfamPF008471.6E-1270120IPR001471AP2/ERF domain
PROSITE profilePS5103221.15371128IPR001471AP2/ERF domain
SuperFamilySSF541711.9E-1971129IPR016177DNA-binding domain
SMARTSM003805.6E-3571134IPR001471AP2/ERF domain
PRINTSPR003671.3E-87283IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.3E-2972129IPR001471AP2/ERF domain
PRINTSPR003671.3E-894110IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0010286Biological Processheat acclimation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MPSNIVERKR KSRGRRDVAE ILRQWREYNE KAETDSCIDG VLPKPIRKAP AKGSKKGCMR  60
GKGGPENGIC GYRGVRQRIW GKWVAEIREP GRGNRLWLGT FSSSHEAALA YDEAARAMYG  120
QSARLNLPDY TNGSSSTAAT VSGSVTAFSD ESEICARQDT NVQVKLEDSS DEYVTLDSSQ  180
CMKEKLNVKE EERELNSVNA FGIGQESKKE ILDDWVMGNG NDQEPLVFDM DETFDINELL  240
GILDDNNASG QDTMQGQVDR QPNFSYQMQF PDANFLGSLN PMEIANPGID YGYPYTQPSE  300
MENNGIGSDH RRFEDLDIQD LDFGGGKDVH DSTT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-1672128360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1916RKSRGRRD
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and abscisic acid-inducible transcription. {ECO:0000269|PubMed:11798174}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00302DAPTransfer from AT2G40340Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10023590m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress and abscisic acid (ABA) treatment. {ECO:0000269|PubMed:11798174}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2545950.0AC254595.1 Capsella rubella clone CAP16-M18, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006294523.10.0dehydration-responsive element-binding protein 2C isoform X2
SwissprotQ8LFR20.0DRE2C_ARATH; Dehydration-responsive element-binding protein 2C
TrEMBLR0FXH60.0R0FXH6_9BRAS; Uncharacterized protein
STRINGCagra.7053s0020.1.p0.0(Capsella grandiflora)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40340.11e-171ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Sazegari S,Niazi A,Ahmadi FS
    A study on the regulatory network with promoter analysis for Arabidopsis DREB-genes.
    Bioinformation, 2015. 11(2): p. 101-6
    [PMID:25848171]
  3. Huang KC,Lin WC,Cheng WH
    Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
    BMC Plant Biol., 2018. 18(1): p. 40
    [PMID:29490615]
  4. Song C,Lee J,Kim T,Hong JC,Lim CO
    VOZ1, a transcriptional repressor of DREB2C, mediates heat stress responses in Arabidopsis.
    Planta, 2018. 247(6): p. 1439-1448
    [PMID:29536220]