PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10023569m
Common NameCARUB_v10023569mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family C2H2
Protein Properties Length: 341aa    MW: 39044.8 Da    PI: 5.0534
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10023569mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.20.00027426123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     ykC  C ksF +   L  H+r+H
  Carubv10023569m  4 YKCRFCFKSFINGKALGGHMRSH 26
                     9*********************9 PP
2zf-C2H214.69.3e-05210232123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      +kC  Cgk+F++   L  H  +H
  Carubv10023569m 210 FKCDTCGKVFKSYQALGGHRASH 232
                      89***********9999998887 PP
3zf-C2H211.90.00071260282123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++Cp+C ++F++   L  H r+H
  Carubv10023569m 260 HECPICFRVFTSGQALGGHKRSH 282
                      79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139128.3E-5327IPR007087Zinc finger, C2H2
SuperFamilySSF576673.07E-9326No hitNo description
SMARTSM003550.035426IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.93426IPR007087Zinc finger, C2H2
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
SuperFamilySSF576673.07E-9205232No hitNo description
PfamPF139121.2E-12209234IPR007087Zinc finger, C2H2
SMARTSM003550.015210232IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.593210237IPR007087Zinc finger, C2H2
PROSITE patternPS000280212232IPR007087Zinc finger, C2H2
PfamPF139129.1E-11259282IPR007087Zinc finger, C2H2
SMARTSM003550.15260282IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.182260282IPR007087Zinc finger, C2H2
PROSITE patternPS000280262282IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MERYKCRFCF KSFINGKALG GHMRSHMLTL SAKPQLYEST REQEEEEEEE EERRTSQLSD  60
DGTESDASSS YDGFDHLKRN RTQMVDDGGL EFDFAEDDDV ESETESSRIN PTRRRSKRTR  120
KLGSFDFDYK ELKTSQPGEL ATEPEHHSSA SDTTTEQDLA FCLIMLSRDK WKQHKKKTKQ  180
SVEEEEEYET DHECGEDYKS SKNRGGRGRF KCDTCGKVFK SYQALGGHRA SHKKNKACTT  240
KTEQVKTEYV HGVAEKKKAH ECPICFRVFT SGQALGGHKR SHGSSIGAGR LSVNQIVLIN  300
QEEEEEEEDE EEVSMKQRMI DLNLPAPNEE DETSLVFDEW *
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10023569m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2546050.0AC254605.1 Capsella rubella clone CAP23-M05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006294533.10.0zinc finger protein ZAT4
SwissprotQ9SHD01e-144ZAT4_ARATH; Zinc finger protein ZAT4
TrEMBLR0FXI70.0R0FXI7_9BRAS; Uncharacterized protein
STRINGXP_006294533.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14652893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45120.11e-127C2H2-like zinc finger protein