PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10023521m
Common NameCARUB_v10023521mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family Trihelix
Protein Properties Length: 354aa    MW: 40133.2 Da    PI: 9.4435
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10023521mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix52.71.1e-1646128275
         trihelix   2 WtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtses 75 
                      Wt +e+l+Liea++  eer  r++         + + +W+++ ++ ++rg++r+++qC++kw+nl ++ykki+e e++r + s
  Carubv10023521m  46 WTVNETLVLIEAKKMEEERRMRRSekkpenknkSSELRWKWIEEYSWRRGCQRNQNQCNDKWDNLMRDYKKIREYERSRIESS 128
                      *************966666554322445555558999****************************************985444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.15538111IPR017877Myb-like domain
PfamPF138379.6E-1445144No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
FLNSQDSKTH TDGYAYLLVN PKRDTHMADP SGGAEKVTRE FRKGNWTVNE TLVLIEAKKM  60
EEERRMRRSE KKPENKNKSS ELRWKWIEEY SWRRGCQRNQ NQCNDKWDNL MRDYKKIREY  120
ERSRIESSSF NTGSSPPASY WKMEKSERKE RSLPTNMLSQ IYEALAELVE KKTLPYSSSS  180
SLGNGGQGFV APVMAQQMLQ IPTTIVLSLQ PPPPQPLVLS HPPPFTFHAE PIQPTVDTSG  240
AKRRRTTTPP GETTAQGEIS EDADVMVGAA ISRSASVIAQ VIRESEERQE MRHKEVMRLQ  300
ERRLKMEESK ADINRQGMSG LVDAINQLAT SILALASSSS SCHNNHNRQE GPP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10023521m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006294493.20.0uncharacterized protein LOC17889985
TrEMBLR0FXE50.0R0FXE5_9BRAS; Uncharacterized protein (Fragment)
STRINGXP_006294493.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34932662
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35640.11e-108Trihelix family protein