PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10023405m
Common NameCARUB_v10023405mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family C2H2
Protein Properties Length: 388aa    MW: 43338.5 Da    PI: 8.427
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10023405mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.20.00013146169123
                      EEETTTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                      ++C+ Cg+ F r  +L++Hi   H
  Carubv10023405m 146 FPCNSCGEIFQRINLLESHIAIkH 169
                      89******************9877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512576124No hitNo description
PROSITE profilePS501579.349146174IPR007087Zinc finger, C2H2
PROSITE patternPS000280148169IPR007087Zinc finger, C2H2
SuperFamilySSF563991.06E-12171386No hitNo description
Gene3DG3DSA:3.90.228.101.6E-4317385IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MAARKLGSLL RQYFLSLCFL FLGCFFFPKG GDCKQKRRKK KLRIVSSSGS SALSSSWTYL  60
KRVFLSTTRI SKSRNQTHPN GTLTSARSSQ NSLVTLVQPD SFPTNQPDPD TRIQQQQQQT  120
EFEISYSGDN INNNPLFLLP LRNEIFPCNS CGEIFQRINL LESHIAIKHA VSELIAGESS  180
TNIVEIIFKS GWPEQVNRKS PEIIRILKIH NSQKILTRFE EYREFVKSKA ARSRWEDERC  240
VADGNELLRF YCSTFMCDLG QNGKSNLCGH QYCSICGIIG SGFSPKLDGI ATLATGWRGH  300
VAVPEEVEEE FGFMNVKRAM LVCRVVAGRV GCDLMDDVDK SEGGGYDSLV GQSGNKSGAL  360
LRIDDDELLV FNPRAVLPCF VIVYNTV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13641RRKKKL
23642RRKKKLR
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10023405m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1207750.0AY120775.1 Arabidopsis thaliana unknown protein (At2g29660) mRNA, complete cds.
GenBankBT0084480.0BT008448.1 Arabidopsis thaliana At2g29660 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006294390.10.0uncharacterized protein LOC17889454
TrEMBLR0HTA30.0R0HTA3_9BRAS; Uncharacterized protein
STRINGXP_006294390.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM79192640
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29660.10.0C2H2 family protein