PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10023231m
Common NameCARUB_v10023231mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family TALE
Protein Properties Length: 440aa    MW: 49790 Da    PI: 7.5167
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10023231mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.94.1e-092552921954
                      HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
         Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      Fe   ++yp   ++  LAk++gLt++qV++WF N R +
  Carubv10023231m 255 FEHflHPYPRDLDKVMLAKQTGLTKSQVSNWFINARVR 292
                      5544589*****************************87 PP
2BELL110.78.3e-36135205272
             BELL   2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                      rqel++kkakL+s++e+V++rYkqy++q+qt+issFe++aglgsa+ Yt++Al++iS++Fr +kd+i+ qi
  Carubv10023231m 135 RQELEIKKAKLISMVEKVEQRYKQYQDQMQTIISSFEQAAGLGSANAYTNMALQTISKKFRVVKDMICLQI 205
                      79******************************************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005749.2E-5473203IPR006563POX domain
PfamPF075263.5E-3484201IPR006563POX domain
PROSITE profilePS5007111.904233296IPR001356Homeobox domain
CDDcd000865.29E-11236297No hitNo description
SMARTSM003891.8E-8236300IPR001356Homeobox domain
SuperFamilySSF466899.84E-17237303IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.4E-27239302IPR009057Homeodomain-like
PfamPF059203.0E-17253292IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    Send to blast
MASFFNGESD MRDQPSSDLF MMNLNPFTEP TTTTNGHNHH FYNLCFVSQQ HGPRDEVDHL  60
EQGNSSISTF SNQELVFKAL APIYLRAAQE LLNEIVNLGN GSHGAKQKQP MSKESGIYGN  120
GGILGGHKPG VAGYRQELEI KKAKLISMVE KVEQRYKQYQ DQMQTIISSF EQAAGLGSAN  180
AYTNMALQTI SKKFRVVKDM ICLQIKHINK LLGKKECDDE KLKQLEKMAD RHTNAWRPQR  240
GLPEKAVSVL RSWLFEHFLH PYPRDLDKVM LAKQTGLTKS QVSNWFINAR VRVWKPMVEE  300
LYMEEMDIEE SKKGNNPNEN STKASSSKQP YNNTTSDESS NSILPVFYQR FNENETPMQN  360
SSSSYSIGRF KKHHMNQDNF IHFHGGFENY HTMVGNGVSL SLGLPHSCDQ TFNNIQFGST  420
SQGTEISGIY PSSAYQIMD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A9e-16242300563Homeobox protein Meis2
3k2a_B9e-16242300563Homeobox protein Meis2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10023231m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006294234.20.0BEL1-like homeodomain protein 5
SwissprotQ8S8970.0BLH5_ARATH; BEL1-like homeodomain protein 5
TrEMBLR0FW020.0R0FW02_9BRAS; Uncharacterized protein
STRINGXP_006294234.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM147491418
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27220.10.0BEL1-like homeodomain 5