PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10023056m
Common NameCARUB_v10023056mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family bHLH
Protein Properties Length: 504aa    MW: 56755 Da    PI: 6.0623
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10023056mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.32e-11292337454
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      + +  Er RR + N++f  L++l+P++     +K + a+i+ +A++YIk+L
  Carubv10023056m 292 TTSPTERERRVHFNDRFLDLKKLIPNP-----TKIDRASIVGEAIDYIKEL 337
                      55667**********************.....9****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.25E-14282351IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.73E-11283342No hitNo description
Gene3DG3DSA:4.10.280.106.3E-13286347IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.167288337IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.1E-9291337IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-9294343IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0048658Biological Processanther wall tapetum development
GO:0052543Biological Processcallose deposition in cell wall
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 504 aa     Download sequence    Send to blast
VKRNHLFRLV EPSSWKVHES FVFLLIKVAN FLIFLKDVND SIVVFVTNAE ERGSLYEEMG  60
CFDPNTTAEV TVKSSFSQAE PPPQPPQVLV AGSTSNSNCS VEVEELSEFH LSPQDCPQAS  120
SAPLQFHINP PPPCDQFHNN MIHQMATTHQ QHSDWDNGYQ DFVNMGPNSA TTPDLLSLLH  180
LPRCSLPPPH HPSSMLPNSF SDIMSSSSAA AVMYDPLFHL NFPMQPRDHN QLRNGSCLLG  240
VEDQIQIDAN GGVNMMYFEG GNNNNDNGGF DNGVLEFNTG VTRKTRRSKK STTSPTERER  300
RVHFNDRFLD LKKLIPNPTK IDRASIVGEA IDYIKELLRT IEEFKMLVEK KRFGRFRSKK  360
KARVGQGEGE DQEEEEDTVN YKPQSEIDQS CFNKNNNNSL RCSWLKRKSK ITEVDVRIID  420
DEVTIKLVQK KKINCLLLTT KVLDQLQLDL HHVAGGQIGE HYSFLFNTKI CEGSCVYASG  480
IADTVMEIVE KQYMEAAVPS NGY*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00285DAPTransfer from AT2G31220Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10023056m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By UV treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2285920.0AK228592.1 Arabidopsis thaliana mRNA for putative transcription factor BHLH10, complete cds, clone: RAFL15-38-K03.
GenBankBT0057110.0BT005711.1 Arabidopsis thaliana clone RAFL15-38-K03 (R50165) putative bHLH protein (At2g31220) mRNA, complete cds.
GenBankBT0086080.0BT008608.1 Arabidopsis thaliana clone U50165 putative bHLH protein (At2g31220) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023640475.10.0transcription factor bHLH10
RefseqXP_023640476.10.0transcription factor bHLH10
SwissprotQ84TK10.0BH010_ARATH; Transcription factor bHLH10
TrEMBLR0HNY70.0R0HNY7_9BRAS; Uncharacterized protein (Fragment)
STRINGXP_006294062.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13552696
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31220.10.0bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Cui J, et al.
    Feedback Regulation of DYT1 by Interactions with Downstream bHLH Factors Promotes DYT1 Nuclear Localization and Anther Development.
    Plant Cell, 2016. 28(5): p. 1078-93
    [PMID:27113773]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]