PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10022391m | ||||||||
Common Name | CARUB_v10022391mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | LBD | ||||||||
Protein Properties | Length: 239aa MW: 25746.9 Da PI: 7.4438 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 93.3 | 2.7e-29 | 4 | 104 | 1 | 96 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 +C++C+vlr++C++dC+++p++ +++q++++ +++k++G++ +l+l+++ p++ r+++++sl+yeA+ r+ +Pv G+vg+++++++ +q Carubv10022391m 4 SCNGCRVLRKGCNQDCTIRPCLqwiksADSQANATLFLAKFYGRAGLLNLIESGPDHLRPAIFRSLLYEACGRIVNPVDGSVGLMWTGNWAQCQ 97 6*********************9999767889************************************************************** PP DUF260 90 lkaelal 96 ++++++l Carubv10022391m 98 AAVDAVL 104 *999876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 15.841 | 3 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.6E-23 | 4 | 101 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence Send to blast |
MRISCNGCRV LRKGCNQDCT IRPCLQWIKS ADSQANATLF LAKFYGRAGL LNLIESGPDH 60 LRPAIFRSLL YEACGRIVNP VDGSVGLMWT GNWAQCQAAV DAVLNGLPIT HTPLPSASAS 120 NQIIPPHRTY DIRHVAKDPA PGGDSSEGLA TRANANKSKT QTGRFKRLAE SVNQLGECSH 180 DTWQFPSSGA THGYGHFTLE TVEVRGEAAP FNQSSSNVGF DDQVQVDINE VGLELRLG* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10022391m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB473869 | 0.0 | AB473869.1 Arabidopsis thaliana ASL36 mRNA for ASYMMETRIC LEAVES2-like 36 protein, complete cds. | |||
GenBank | AF447896 | 0.0 | AF447896.1 Arabidopsis thaliana LOB DOMAIN 42 (LBD42) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006301915.1 | 1e-179 | LOB domain-containing protein 42 | ||||
Swissprot | Q9CA30 | 1e-160 | LBD42_ARATH; LOB domain-containing protein 42 | ||||
TrEMBL | R0IDP8 | 1e-178 | R0IDP8_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.3364s0006.1.p | 1e-178 | (Capsella grandiflora) | ||||
STRING | XP_006301915.1 | 1e-178 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM8463 | 26 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68510.1 | 1e-162 | LOB domain-containing protein 42 |
Link Out ? help Back to Top | |
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Phytozome | Carubv10022391m |
Entrez Gene | 17895375 |