PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10022336m
Common NameCARUB_v10022336mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family ERF
Protein Properties Length: 249aa    MW: 27390.9 Da    PI: 4.6942
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10022336mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2612.7e-194595155
              AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     +gy+GVr +  +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++aa++ ++g
  Carubv10022336m 45 PGYRGVRMRT-WGKWVSEIREPRK---KSRIWLGTFSTPEMAARAHDAAALTIKG 95
                     79*****998.**********843...6**********************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.3E-134595IPR001471AP2/ERF domain
CDDcd000181.69E-2245105No hitNo description
PROSITE profilePS5103223.14346103IPR001471AP2/ERF domain
SMARTSM003802.8E-3646109IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-2146104IPR016177DNA-binding domain
PRINTSPR003672.5E-104758IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-3147104IPR001471AP2/ERF domain
PRINTSPR003672.5E-106985IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MTDSSFTSVR LSSPVLQQEE EEHHHHQQQE DSHRTNNKKR VRPDPGYRGV RMRTWGKWVS  60
EIREPRKKSR IWLGTFSTPE MAARAHDAAA LTIKGTSAVL NFPELATYLP RPASSSPRDV  120
QAAAAVAAAM DFSSSSAPVV SDPTSSSVVP ETHLSSSCYS TSTSSSLSPS SEEEAASTAE  180
ELSEIVELPS LETSYDESWS EFVYVDSAYP PSSPWYFNNC YSFCYHSDEN GISMAEPFES  240
SNFGPLFP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-17471031572Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00245DAPTransfer from AT1G77200Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10022336m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0042600.0AC004260.1 Arabidopsis thaliana chromosome I BAC T14N5 genomic sequence, complete sequence.
GenBankAY5608750.0AY560875.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At1g77200) mRNA, complete cds.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006300367.10.0ethylene-responsive transcription factor ERF037
SwissprotO806541e-109ERF37_ARATH; Ethylene-responsive transcription factor ERF037
TrEMBLR0I5F41e-180R0I5F4_9BRAS; Uncharacterized protein
STRINGXP_006300367.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18528283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77200.12e-91ERF family protein