PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10022302m
Common NameCARUB_v10022302mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family NAC
Protein Properties Length: 438aa    MW: 50962.9 Da    PI: 5.0244
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10022302mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM99.45.1e-31231552128
              NAM   2 ppGfrFhPtdeelvveyLkkkvegkk..leleev.ikevdiykvePwdLp.kkvkaeekewyfFskrdkkya..tgkrknratksgyWkatgkd 89 
                      ppG++++P+d++l+   L ++    +  ++l ++ i++++iy+++P++L  +  k++++ew+f s+r+kk++   g +++r  + gyW+a+  +
  Carubv10022302m  23 PPGYKYEPNDKNLIETLLGREHYFGEnnNSLLKFfIHQANIYESNPEQLSvEYEKGNDTEWFFISERNKKKKgkGGINQKRGGNGGYWHAKVAT 116
                      9*****************88744333236666666**************9445455778***9999998887433679999999********** PP

              NAM  90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                      k+v++ +g+ +g k  L++y g++p+g+ktdW+mhey +
  Carubv10022302m 117 KDVYDGQGNIIGYKSPLTYYVGKQPNGVKTDWLMHEYWV 155
                      *************************************76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.53E-3718174IPR003441NAC domain
PROSITE profilePS5100538.87922174IPR003441NAC domain
PfamPF023651.8E-1323153IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MSMPERSSPA PQRQPPSTRP SFPPGYKYEP NDKNLIETLL GREHYFGENN NSLLKFFIHQ  60
ANIYESNPEQ LSVEYEKGND TEWFFISERN KKKKGKGGIN QKRGGNGGYW HAKVATKDVY  120
DGQGNIIGYK SPLTYYVGKQ PNGVKTDWLM HEYWVDHDQS DEEKDYALCK IYKKKKAKEE  180
ESEKQKKAEE EESEKKKKAL KKKVEPQPHH VAYQQVWPGK LDSDQQHQFW PSQLESYQPQ  240
PHHLAYEQLI FQPAPLDPSY QPQPRGLAYQ QQQFCQGPVN SSQPQPPRDI EYQQPYQRQP  300
YGFGYEQYLM MTTLEEENGV ATQQQHQQQM SLPTPPTQVQ DSRSHMVMTG WRKDNSTEED  360
LLDMSKDDRF FDIDELFNDE EEHDGVATKD QQQQQSTPSF PDQSQASPSD QDWSGSFNGE  420
FYDIDELRND VKKGHDE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-19121807171NO APICAL MERISTEM PROTEIN
1ut4_B1e-19121807171NO APICAL MERISTEM PROTEIN
1ut7_A1e-19121807171NO APICAL MERISTEM PROTEIN
1ut7_B1e-19121807171NO APICAL MERISTEM PROTEIN
3swm_A1e-191218010174NAC domain-containing protein 19
3swm_B1e-191218010174NAC domain-containing protein 19
3swm_C1e-191218010174NAC domain-containing protein 19
3swm_D1e-191218010174NAC domain-containing protein 19
3swp_A1e-191218010174NAC domain-containing protein 19
3swp_B1e-191218010174NAC domain-containing protein 19
3swp_C1e-191218010174NAC domain-containing protein 19
3swp_D1e-191218010174NAC domain-containing protein 19
4dul_A1e-19121807171NAC domain-containing protein 19
4dul_B1e-19121807171NAC domain-containing protein 19
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18793ERNKKKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10022302m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023644273.10.0protein BEARSKIN1
TrEMBLR0GGB10.0R0GGB1_9BRAS; Uncharacterized protein
STRINGXP_006301833.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM27931563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55210.15e-46NAC domain containing protein 63