PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10022120m | ||||||||
Common Name | CARUB_v10022120mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | WRKY | ||||||||
Protein Properties | Length: 221aa MW: 24907.2 Da PI: 5.5806 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 49.4 | 9.4e-16 | 82 | 136 | 8 | 59 |
EEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 8 rKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 +KYGqK++k s++ r YYrC++a +C+ +k+v++ +++p v ++Y g+H ++ Carubv10022120m 82 KKYGQKKIKTSPYQRCYYRCSYAkdlNCKGTKRVQKIKDNPPVYRTIYMGKHVCK 136 7*********************99999*************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF118290 | 4.71E-15 | 82 | 136 | IPR003657 | WRKY domain |
SMART | SM00774 | 5.9E-17 | 82 | 137 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 5.6E-15 | 82 | 136 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 14.194 | 82 | 133 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.2E-15 | 82 | 136 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 221 aa Download sequence Send to blast |
MVSNIDHKAV GALLHGQECA NSLKKLFENG EISLGSAKPL IDTILDSFSL VLSCMESPNP 60 PQHYESSFGN IAGFVLQRPS TKKYGQKKIK TSPYQRCYYR CSYAKDLNCK GTKRVQKIKD 120 NPPVYRTIYM GKHVCKAFTI HDDDTYSSQM IQFDQVVSEP VMPQLAAIDH QATTMEDIAI 180 DQTMNQECDI NDLLVDYDQF WANQFPSGDT MFLDDIASFY * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10022120m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006301477.1 | 1e-138 | probable WRKY transcription factor 64 | ||||
Swissprot | Q93WV7 | 3e-99 | WRK67_ARATH; Probable WRKY transcription factor 67 | ||||
TrEMBL | R0GBZ3 | 1e-165 | R0GBZ3_9BRAS; Uncharacterized protein | ||||
STRING | XP_006300359.1 | 1e-166 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5609 | 18 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66550.2 | 1e-102 | WRKY DNA-binding protein 67 |
Link Out ? help Back to Top | |
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Phytozome | Carubv10022120m |
Entrez Gene | 17895224 |