PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Carubv10022023m | ||||||||
Common Name | CARUB_v10022023mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
|
||||||||
Family | BBR-BPC | ||||||||
Protein Properties | Length: 287aa MW: 32252.8 Da PI: 10.3805 | ||||||||
Description | BBR-BPC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GAGA_bind | 314.3 | 3.9e-96 | 2 | 286 | 1 | 301 |
GAGA_bind 1 mdddgsrernkgyyepaaslkenlglqlmssiaerdaki.....rernlalsekkaav............aerd........maflqrdkalae 69 m +dg +rn+gyyep+ +++ nlg+ql+ si +r +k+ +++n ++ ++ +++ +rd m++ ++l++ Carubv10022023m 2 MGEDGLSNRNWGYYEPS-QFRPNLGFQLIPSIINRSEKPfvdspQNQNPNFVTPTNVYrgggstssslmsFPRDytvsdapfMSY----SWLNQ 90 88999***********9.************************9999999999999999555554444444333355555444444....56666 PP GAGA_bind 70 rnkalverdnkllalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekk 163 +rd+k+++++++ + ++ +g l ++a +++ +l +++++ +++e+ ++++ + +qr+ pk+kk Carubv10022023m 91 ------HRDSKFFSNVPNPSN---HHHTGL-------------------LVPEASRMTQPMQLLQPEVVGEVDESLKRRQYNVGQRG-APKVKK 155 ......777777777774333...222333...................33344444444446778888999999999999988776.699999 PP GAGA_bind 164 akkkkkksekskkkvkkesad.erskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRia 256 +kk k+ +++++++ +rs +ksi++v+ngvs+D++++PvPvCsCtG+++qCY+WG+GGWqSaCCtt++S+yPLP+stkrrgaRia Carubv10022023m 156 EKKLKD--------NNMPRVQrTRSPLLRKSIEMVINGVSMDIGGIPVPVCSCTGMPQQCYRWGCGGWQSACCTTNVSMYPLPMSTKRRGARIA 241 999998........345555547899******************************************************************** PP GAGA_bind 257 grKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301 grKmSqgaf+k+LekL+++G+d+s p+DLk+hWAkHGtnkfvtir Carubv10022023m 242 GRKMSQGAFRKVLEKLSTDGFDFSVPIDLKSHWAKHGTNKFVTIR 286 ********************************************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01226 | 1.2E-146 | 2 | 286 | IPR010409 | GAGA-binding transcriptional activator |
Pfam | PF06217 | 1.2E-83 | 4 | 286 | IPR010409 | GAGA-binding transcriptional activator |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 287 aa Download sequence Send to blast |
MMGEDGLSNR NWGYYEPSQF RPNLGFQLIP SIINRSEKPF VDSPQNQNPN FVTPTNVYRG 60 GGSTSSSLMS FPRDYTVSDA PFMSYSWLNQ HRDSKFFSNV PNPSNHHHTG LLVPEASRMT 120 QPMQLLQPEV VGEVDESLKR RQYNVGQRGA PKVKKEKKLK DNNMPRVQRT RSPLLRKSIE 180 MVINGVSMDI GGIPVPVCSC TGMPQQCYRW GCGGWQSACC TTNVSMYPLP MSTKRRGARI 240 AGRKMSQGAF RKVLEKLSTD GFDFSVPIDL KSHWAKHGTN KFVTIR* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Carubv10022023m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC012563 | 1e-171 | AC012563.7 Arabidopsis thaliana chromosome 1 BAC T23K23 genomic sequence, complete sequence. | |||
GenBank | BT022117 | 1e-171 | BT022117.1 Arabidopsis thaliana At1g68120 mRNA, complete cds. | |||
GenBank | CP002684 | 1e-171 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006301584.1 | 0.0 | protein BASIC PENTACYSTEINE3 | ||||
Refseq | XP_023643123.1 | 0.0 | protein BASIC PENTACYSTEINE3 | ||||
Swissprot | Q9C9X6 | 1e-163 | BPC3_ARATH; Protein BASIC PENTACYSTEINE3 | ||||
TrEMBL | R0GFA2 | 0.0 | R0GFA2_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.1111s0005.1.p | 0.0 | (Capsella grandiflora) | ||||
STRING | XP_006301584.1 | 0.0 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15347 | 15 | 18 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G68120.1 | 1e-165 | basic pentacysteine 3 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Carubv10022023m |
Entrez Gene | 17894926 |