PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10021910m
Common NameCARUB_v10021910mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family ERF
Protein Properties Length: 185aa    MW: 20918.8 Da    PI: 6.2877
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10021910mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP246.11.2e-142978255
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
                      y+GVr++    +Wv+e+r+p        +r++lg++  ae+Aa+a++ a ++l+g
  Carubv10021910m 29 IYRGVRRRN-GDKWVCEVREP-----IhqRRVWLGTYPAAEMAARAHDVAVLALRG 78
                     69****877.9******9997.....337*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.99E-252888No hitNo description
PfamPF008472.1E-102878IPR001471AP2/ERF domain
PROSITE profilePS5103221.5622986IPR001471AP2/ERF domain
SMARTSM003803.3E-242992IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.4E-282988IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-192988IPR016177DNA-binding domain
PRINTSPR003674.2E-73041IPR001471AP2/ERF domain
PRINTSPR003674.2E-75268IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010371Biological Processregulation of gibberellin biosynthetic process
GO:0016049Biological Processcell growth
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MEKDDIIVAG MKPKKRAGRR IFKETRHPIY RGVRRRNGDK WVCEVREPIH QRRVWLGTYP  60
AAEMAARAHD VAVLALRGRS ACLNFSDSVW RLPVPESTDP DTIRRTAAEA AEMFRPPEFS  120
TGITVLPSSG EFAASDGEGV AGMMMRLAEE PLMSPPRSYT DNDMNTSVYA EEEMYYEELS  180
LWSY*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates cold or dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00002PBMTransfer from 475045Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10021910m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006301487.11e-134dehydration-responsive element-binding protein 1E
RefseqXP_023643954.11e-134dehydration-responsive element-binding protein 1E
SwissprotQ9SGJ61e-116DRE1E_ARATH; Dehydration-responsive element-binding protein 1E
TrEMBLR0I8G11e-133R0I8G1_9BRAS; Uncharacterized protein
STRINGCagra.23885s0001.1.p1e-134(Capsella grandiflora)
STRINGXP_006301487.11e-134(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35528187
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63030.21e-119ERF family protein