PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10021744m | ||||||||
Common Name | CARUB_v10021744mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | LBD | ||||||||
Protein Properties | Length: 185aa MW: 21042.1 Da PI: 8.3195 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 124 | 7.5e-39 | 12 | 111 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 aCaaCk++r+kC+kdCvlapyfp+++pk+f n hklFG+sn++k++k+++e++r++am+ l+++A+ara dPv G+++++ +l++++e+ +ael Carubv10021744m 12 ACAACKYQRKKCTKDCVLAPYFPQDRPKQFLNSHKLFGVSNITKMIKKVDESQRDIAMQNLIFHANARALDPVGGVYRIVCDLKRKIECCQAEL 105 7********************************************************************************************* PP DUF260 95 allkee 100 + + ++ Carubv10021744m 106 NFTLQQ 111 998776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.067 | 11 | 112 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 5.2E-36 | 12 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 185 aa Download sequence Send to blast |
MSLSSLSGGS TACAACKYQR KKCTKDCVLA PYFPQDRPKQ FLNSHKLFGV SNITKMIKKV 60 DESQRDIAMQ NLIFHANARA LDPVGGVYRI VCDLKRKIEC CQAELNFTLQ QIAMFRSLAQ 120 QEQRQRQDLP FGCHSYGGLL EQGDECINVD GYDYLQNMQQ EERRISDQEQ KHLLRQILMS 180 PSTN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-25 | 2 | 106 | 1 | 105 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-25 | 2 | 106 | 1 | 105 | LOB family transfactor Ramosa2.1 |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10021744m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006301334.1 | 1e-136 | LOB domain-containing protein 7 | ||||
Swissprot | Q9SSM9 | 3e-80 | LBD7_ARATH; LOB domain-containing protein 7 | ||||
TrEMBL | R0GEJ3 | 1e-134 | R0GEJ3_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.1013s0013.1.p | 1e-135 | (Capsella grandiflora) | ||||
STRING | XP_006301334.1 | 1e-135 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15466 | 14 | 17 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72980.1 | 1e-82 | LOB domain-containing protein 7 |
Link Out ? help Back to Top | |
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Phytozome | Carubv10021744m |
Entrez Gene | 17895451 |