PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Carubv10021541m

Common Name

CARUB_v10021541mg

Organism

Capsella rubella

Taxonomic ID

81985

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

Nin-like

Protein Properties

Length: 299aa MW: 33894.1 Da PI: 6.7978

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Carubv10021541m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	82	5.9e-26	132	182	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +k +s+e++s+yF++pi++AA eL+v+lT+LKr+CR++GI+RWPhRk+ sl Carubv10021541m 132 SKALSMETVSRYFYMPITQAAMELNVGLTLLKRRCRELGIRRWPHRKLMSL 182 689*********************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.564	104	202	IPR003035	RWP-RK domain
Pfam	PF02042	5.4E-21	135	182	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 299 aa Download sequence Send to blast
MADHKNKEEK SFSFLAHSPP VDHSSLSYPL YDWEEDLLAF HESSASQSFP LTTTSLPLPD 60 LEPLSEDVLN SYSSASWNET EPNRGDVASS EKKTKHGVVQ ETTKKRKLNE RRREPNVRII 120 SDITTYTSSP ASKALSMETV SRYFYMPITQ AAMELNVGLT LLKRRCRELG IRRWPHRKLM 180 SLKTLISNVK ELQKMEGEEN ADKLQDALEM LEKEKRTIEE LPDLEFEDKT KRLRQACFKA 240 NHKRKKKRSL KSDHAHIASC SSSGSVASDE SVNDGGMESD EEVKYLLCGF SNEFSSGL*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00234	DAP	Transfer from AT1G74480	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Carubv10021541m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	DQ056518	0.0	DQ056518.1 Arabidopsis thaliana RWP-RK domain-containing protein (At1g74480) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006301143.1	0.0	protein RKD2
Swissprot	Q9CA66	1e-170	RKD2_ARATH; Protein RKD2
TrEMBL	R0GEJ6	0.0	R0GEJ6_9BRAS; Uncharacterized protein
STRING	XP_006301143.1	0.0	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3966	23	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G74480.1	1e-153	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	Carubv10021541m
Entrez Gene	17895673

Publications ? help Back to Top
Tedeschi F,Rizzo P,Rutten T,Altschmied L,Bäumlein H RWP-RK domain-containing transcription factors control cell differentiation during female gametophyte development in Arabidopsis. New Phytol., 2017. 213(4): p. 1909-1924 [PMID:27870062]