PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10021118m
Common NameCARUB_v10021118mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family ERF
Protein Properties Length: 145aa    MW: 16376.6 Da    PI: 10.7075
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10021118mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.68.7e-2076128155
              AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                      ++++GVr+++ +g+WvAeIr+     + +r r +lg+f taeeAa a+++a+ +l g
  Carubv10021118m  76 KKFRGVRQRP-WGKWVAEIRCaR---KgRRDRLWLGTFNTAEEAALAYDNAAVQLIG 128
                      59********.**********55...3347**********************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381231.1E-371143IPR017392AP2/ERF transcription factor ERF/PTI6
CDDcd000188.45E-2476135No hitNo description
SMARTSM003802.5E-3177142IPR001471AP2/ERF domain
PROSITE profilePS5103221.10177136IPR001471AP2/ERF domain
SuperFamilySSF541713.47E-2077137IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.8E-2877136IPR001471AP2/ERF domain
PfamPF008476.1E-1477128IPR001471AP2/ERF domain
PRINTSPR003673.9E-117889IPR001471AP2/ERF domain
PRINTSPR003673.9E-11102118IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 145 aa     Download sequence    Send to blast
MKRIIRISFT DAEATDSSSD EEEEETQKRG SQTTRRRGKR LVKEIVIDPA DTLDVCKTRF  60
KIRIPSEFLT AAKERKKFRG VRQRPWGKWV AEIRCARKGR RDRLWLGTFN TAEEAALAYD  120
NAAVQLIGPH APTNFGVSDV ARGA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-17741351171Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10021118m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006300566.11e-101ethylene-responsive transcription factor ERF070
SwissprotQ9C9959e-78ERF70_ARATH; Ethylene-responsive transcription factor ERF070
TrEMBLR0HUE71e-100R0HUE7_9BRAS; Uncharacterized protein
STRINGXP_006300566.11e-101(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40002359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71130.14e-58ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]